Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.9e-61 237.3 114 100.0
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.7e-39 166.0 118 73.7
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-34 149.4 118 68.6
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-33 146.7 127 66.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 7.1e-30 134.0 114 60.5
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.1e-29 132.5 114 57.9
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.5e-27 126.3 115 57.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 8.1e-26 120.6 129 53.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 8.1e-26 120.6 123 53.7
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.2e-24 116.7 122 51.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.5e-24 116.3 121 52.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.6e-24 115.5 115 53.0
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.4e-24 114.8 114 50.9
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-23 113.2 127 48.8
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.1e-22 110.2 119 49.6
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.4e-22 109.8 117 51.3
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.2e-22 108.6 115 51.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.2e-22 108.2 121 49.6
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.3e-20 103.2 116 49.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-20 102.8 128 45.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 5.1e-20 101.3 128 47.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.9e-19 99.4 119 45.4
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.3e-19 98.2 128 46.9
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-19 98.2 128 46.9
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-19 98.2 128 46.9
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-19 98.2 128 46.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.3e-19 98.2 119 48.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 4.3e-19 98.2 119 47.1
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 5.6e-19 97.8 121 44.6
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.3e-19 97.4 128 45.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.6e-19 97.1 119 49.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.3e-18 96.7 128 48.4
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.3e-18 96.7 128 43.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-18 96.7 129 45.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.8e-18 95.5 125 45.6
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.8e-18 95.5 126 46.8
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.8e-18 95.5 119 48.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.8e-18 95.5 124 45.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.6e-18 95.1 117 47.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 4.8e-18 94.7 115 47.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.2e-18 94.4 128 43.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.1e-17 93.6 139 42.4
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.1e-17 93.6 125 44.0
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.1e-17 93.6 119 46.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.1e-17 93.6 119 46.2
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.4e-17 93.2 113 48.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.8e-17 92.8 123 43.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-17 92.8 126 46.8
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-17 92.8 126 47.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.8e-17 92.8 113 49.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.8e-17 92.8 119 45.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.8e-17 92.8 128 46.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-17 92.4 113 47.8
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.1e-17 92.0 121 47.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.1e-17 92.0 146 41.1
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-17 92.0 128 44.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.1e-17 92.0 118 46.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.1e-17 92.0 122 43.4
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-17 91.7 113 46.9
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 4.0e-17 91.7 130 46.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 4.0e-17 91.7 126 45.2
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 4.0e-17 91.7 116 43.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 5.3e-17 91.3 129 44.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 5.3e-17 91.3 125 41.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 6.9e-17 90.9 111 47.7
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.9e-17 90.9 116 48.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.9e-17 90.9 127 46.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.9e-17 90.9 127 46.5
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.0e-17 90.5 115 48.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 9.0e-17 90.5 127 48.0
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-16 90.1 115 47.8
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-16 90.1 111 46.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-16 90.1 146 39.7
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.5e-16 89.7 125 44.8
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.6e-16 89.0 119 42.9
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.6e-16 89.0 124 42.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.6e-16 89.0 130 42.3
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-16 89.0 127 41.7
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.4e-16 88.6 125 44.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 4.5e-16 88.2 113 46.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.5e-16 88.2 127 44.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.5e-16 88.2 115 42.6
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.5e-16 88.2 125 43.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.8e-16 87.8 117 45.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 5.8e-16 87.8 112 45.5
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.8e-16 87.8 113 46.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 5.8e-16 87.8 117 43.6
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.8e-16 87.8 115 43.5
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.8e-16 87.8 113 46.0
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 7.6e-16 87.4 113 44.2
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 7.6e-16 87.4 113 43.4
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.6e-16 87.4 121 46.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.6e-16 87.4 121 46.3
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 9.9e-16 87.0 115 43.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 9.9e-16 87.0 113 41.6
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-15 86.7 113 41.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-15 86.7 113 41.6
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.7e-15 86.3 110 45.5
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-15 86.3 113 44.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.2e-15 85.9 115 48.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.8e-15 85.1 118 41.5
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-15 85.1 110 45.5
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.8e-15 85.1 113 47.8
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.9e-15 84.7 117 41.9
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.4e-15 84.3 116 45.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 6.4e-15 84.3 124 42.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 8.4e-15 84.0 113 45.1
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.1e-14 83.6 140 37.1
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.1e-14 83.6 141 38.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.1e-14 83.6 125 38.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.1e-14 83.6 129 41.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-14 83.2 125 40.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-14 82.8 116 44.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.9e-14 82.8 119 40.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-14 82.4 110 45.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.4e-14 82.4 135 38.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.2e-14 82.0 110 42.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 3.2e-14 82.0 118 44.1
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.2e-14 81.6 129 42.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.2e-14 81.6 129 39.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 4.2e-14 81.6 115 40.9
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 7.1e-14 80.9 120 41.7
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 7.1e-14 80.9 123 37.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-13 80.1 117 41.9
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-13 80.1 126 38.9
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-13 79.7 129 41.9
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.6e-13 79.7 128 40.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.7e-13 79.0 125 43.2
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.7e-13 79.0 119 42.9
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.5e-13 78.6 142 37.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.5e-13 78.6 121 41.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.5e-13 78.6 118 40.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.5e-13 78.6 114 38.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.6e-13 78.2 113 44.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 6.0e-13 77.8 111 45.9
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-12 77.0 116 42.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.3e-12 75.9 116 41.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.0e-12 75.5 113 38.1
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.0e-12 75.5 121 38.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.1e-12 74.7 135 37.8
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 6.7e-12 74.3 123 38.2
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.7e-12 73.9 109 37.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-11 73.6 117 38.5
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-11 72.8 111 40.5
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 3.3e-11 72.0 124 39.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.3e-11 72.0 132 38.6
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 4.3e-11 71.6 116 41.4
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.4e-11 70.9 129 37.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.6e-10 68.6 140 33.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 8.1e-10 67.4 95 42.1
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-09 66.2 130 33.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.4e-09 65.9 81 45.7
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 3.1e-09 65.5 87 44.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.3e-09 64.7 101 41.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.4e-08 62.0 69 47.8
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 3.4e-08 62.0 135 32.6
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.8e-08 61.2 101 38.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.8e-08 61.2 124 36.3
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-08 60.8 81 44.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 7.6e-08 60.8 81 44.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 7.6e-08 60.8 81 44.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 7.6e-08 60.8 137 34.3
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 9.9e-08 60.5 81 44.4
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 9.9e-08 60.5 135 31.1
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-07 60.1 73 47.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-07 60.1 133 32.3
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-07 59.3 81 44.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-07 59.3 134 32.1
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.9e-07 58.9 139 32.4
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.9e-07 58.2 119 32.8
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 6.4e-07 57.8 123 33.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 8.4e-07 57.4 129 34.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 8.4e-07 57.4 123 32.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.4e-07 57.4 116 31.9
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 9.3e-06 53.9 131 34.4


User provided reference genes

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