Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 2568.5 1306 100.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 2169.8 1330 85.1
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 2079.7 1329 81.0
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 2070.0 1330 81.7
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 2062.7 1331 80.2
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2060.4 1326 80.3
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2053.9 1324 80.1
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 2025.0 1324 78.8
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 2022.3 1324 79.3
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 2006.9 1325 78.1
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1980.3 1335 76.8
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1980.3 1333 76.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1961.4 1404 73.7
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1950.3 1333 75.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1748.8 1327 68.7
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1746.5 1314 69.2
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1745.7 1313 69.2
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1740.3 1314 69.4
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1733.8 1325 68.5
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1732.6 1316 68.9
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1731.5 1327 68.0
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1725.3 1314 68.8
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1721.8 1313 68.4
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1719.5 1344 67.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1718.7 1325 68.1
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1703.0 1330 67.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1701.8 1332 67.4
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1699.9 1330 67.1
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1313 68.5
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1692.6 1324 67.2
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1690.2 1313 67.6
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1682.5 1325 67.0
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1665.6 1314 67.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1322 66.3
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1647.9 1334 65.8
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1638.2 1380 64.2
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1626.3 1326 64.3
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1626.3 1322 65.6
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1625.5 1326 63.8
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1616.7 1318 63.1
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1615.9 1311 63.7
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1614.4 1330 63.6
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1611.7 1342 63.2
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1611.3 1327 62.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1610.5 1323 64.7
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1352 62.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1600.5 1320 63.4
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1596.6 1332 63.3
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1596.6 1326 63.8
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1594.7 1311 65.1
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1341 64.7
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1590.5 1314 62.9
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1590.5 1312 63.4
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1318 63.4
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1579.7 1242 67.1
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1313 61.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1313 62.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1323 62.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1563.9 1323 63.3
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1563.9 1334 60.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1562.7 1334 61.8
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1561.6 1330 61.6
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1560.4 1327 63.3
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1558.9 1377 60.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1552.3 1316 62.5
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1551.6 1325 61.1
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1550.8 1316 62.8
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1550.8 1381 59.8
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1550.0 1313 62.5
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1545.8 1314 61.4
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1535.4 1311 61.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1531.2 1314 62.3
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1527.7 1314 62.4
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1517.3 1289 63.0
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1515.0 1244 64.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1513.4 1332 61.3
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1513.0 1325 61.7
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1513.0 1312 61.8
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1512.3 1325 61.6
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1496.9 1313 60.6
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1470.3 1325 60.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1460.7 1324 59.4
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1452.2 1247 61.0
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1448.3 1247 62.9
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1448.0 1316 59.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1437.9 1357 57.8
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1426.8 1272 60.8
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1395.9 1084 67.3
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1394.0 1229 59.9
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1385.2 1328 55.6
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1367.8 1068 67.1
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1357.8 1314 56.4
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1346.6 1311 55.2
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1342.8 1349 54.3
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1315.1 1315 54.8
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1218.4 1099 59.5
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1126.7 946 62.8
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1092.4 1323 46.2
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1092.0 892 64.0
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1080.9 1311 48.9
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 5.4e-307 1058.1 1324 45.4
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.3e-300 1034.6 796 66.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 1.6e-298 1030.0 1000 57.4
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 4.5e-298 1028.5 1025 53.8
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.6e-285 986.1 819 62.4
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.4e-275 953.0 1254 44.5
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 7.3e-272 941.4 724 67.8
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.3e-255 887.5 1244 42.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 4.1e-198 696.4 1349 34.8
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 6.5e-196 689.1 604 62.1
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 7.5e-184 649.0 626 57.0
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 8.0e-178 629.0 602 54.2
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 2.0e-165 587.8 1463 32.1
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.3e-156 558.5 540 58.3
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.9e-151 540.8 1334 30.6
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.9e-148 530.4 548 54.6
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 2.8e-146 524.2 677 47.0
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 9.3e-118 429.5 275 77.1
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.2e-117 429.1 1170 30.4
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 5.5e-110 403.7 389 57.3
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 9.4e-110 402.9 752 38.8
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.0e-95 356.3 247 74.9
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.6e-93 349.0 357 52.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 5.0e-87 327.4 245 70.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.2e-86 323.6 270 60.4
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.2e-86 323.6 270 60.4
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 4.8e-74 284.3 201 70.1
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.0e-71 276.6 235 58.7
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 4.0e-60 238.0 192 65.1
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.3e-54 218.4 161 68.3
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 7.3e-54 217.2 175 66.3
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.8e-48 197.2 161 62.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.2e-40 173.3 104 77.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 3.4e-35 155.2 124 65.3
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.2e-29 134.4 105 66.7
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 2.0e-27 129.4 226 40.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.2e-24 120.2 108 64.8
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.7e-23 116.3 115 49.6
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.3e-23 115.9 1276 20.5
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-22 113.6 115 47.8
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.8e-20 106.3 105 52.4
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 2.6e-19 102.4 162 40.7
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.6e-19 102.4 62 82.3
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.2e-18 99.4 161 40.4
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 8.4e-18 97.4 136 38.2
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 8.7e-15 87.4 126 39.7
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.1e-12 80.5 164 37.2
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.1e-12 80.5 130 34.6
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 3.1e-12 79.0 62 64.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.6e-11 75.9 79 46.8
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.2e-10 72.8 122 41.8
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 2.1e-08 66.2 230 27.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.3e-07 63.5 91 42.9
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 8.7e-07 60.8 47 63.8
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.1e-06 60.5 40 75.0
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 3.3e-06 58.9 59 55.9
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 7.4e-06 57.8 50 58.0


User provided reference genes

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