Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 0.0e+00 2907.9 1561 100.0
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 0.0e+00 1876.7 1612 67.4
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 0.0e+00 1672.1 1639 61.9
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 0.0e+00 1473.4 1427 61.5
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1470.7 1708 54.9
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 0.0e+00 1469.5 1654 55.4
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1415.2 1700 53.9
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1279.2 1714 50.5
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1237.2 1712 49.9
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1163.7 1706 47.7
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1124.4 1702 46.8
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1117.8 1693 46.4
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 9.6e-311 1070.8 1763 44.6
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 7.6e-308 1061.2 1610 47.3
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 5.3e-168 596.7 1838 33.9
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.0e-167 594.7 1862 33.0
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.4e-144 518.8 1831 32.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-125 456.1 1881 30.7
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 1.3e-121 442.6 361 66.5
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 7.2e-117 426.8 1922 30.2
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.5e-109 402.5 1633 30.5
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.3e-109 401.4 1861 29.7
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 3.6e-108 397.9 1698 30.0
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.6e-106 391.7 1834 29.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 9.8e-106 389.8 1665 29.8
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 9.2e-104 383.3 1810 29.1
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.9e-102 378.3 1806 29.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.5e-101 375.2 1665 31.1
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.2e-96 358.2 1882 28.5
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 7.8e-95 353.6 1881 29.0
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 1.3e-94 352.8 1860 29.4
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 5.2e-91 340.9 1793 29.1
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.3e-89 333.6 1682 27.6
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 3.0e-86 325.1 1676 28.9
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 8.1e-84 317.0 464 44.2
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 8.9e-83 313.5 1849 28.2
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.2e-82 313.2 1818 28.2
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.3e-81 309.7 1613 28.6
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 4.9e-81 307.8 329 53.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 8.6e-78 297.0 1691 27.9
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.2e-76 293.1 1822 28.5
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-76 292.7 1678 28.7
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.7e-76 291.2 2030 25.8
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 8.1e-76 290.4 1709 26.7
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.8e-75 289.3 1635 28.8
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.0e-74 285.8 1593 29.1
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 4.4e-74 284.6 1901 27.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.4e-73 280.8 1626 28.7
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 8.4e-73 280.4 1631 27.8
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 2.4e-72 278.9 306 53.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.2e-72 278.1 1630 26.7
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.2e-71 276.6 1617 28.4
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.5e-71 275.0 1747 27.3
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 7.8e-71 273.9 1759 26.7
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.3e-70 273.1 1661 27.3
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.8e-66 257.7 1647 27.5
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.6e-63 249.6 1789 26.6
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.3e-62 245.7 1814 26.6
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.0e-62 245.4 1633 26.7
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 5.1e-62 244.6 1676 28.5
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.6e-60 239.6 1804 25.5
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 6.2e-60 237.7 1682 24.2
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.2e-60 237.7 1699 27.9
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.4e-58 231.9 457 46.2
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.9e-57 228.8 1697 27.0
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.3e-54 219.9 1693 26.1
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.8e-54 219.5 1825 27.0
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 2.3e-54 219.2 183 67.2
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.7e-54 217.6 1801 26.9
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.9e-53 216.1 602 32.4
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.9e-53 216.1 1793 25.9
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 2.5e-53 215.7 672 34.4
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 7.4e-53 214.2 1769 26.2
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.4e-50 205.3 672 36.2
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.9e-49 202.2 690 35.1
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.9e-48 199.5 661 34.9
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.5e-47 195.3 683 35.0
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 7.9e-47 194.1 661 34.8
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.0e-46 192.2 1550 27.4
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 5.1e-46 191.4 1767 24.9
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 9.6e-45 187.2 1406 24.9
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.3e-44 186.8 863 30.9
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 4.8e-44 184.9 1737 24.8
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 5.3e-43 181.4 475 41.3
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.7e-41 176.4 1864 25.8
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 6.5e-41 174.5 1622 24.0
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 7.1e-40 171.0 1724 25.5
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 2.7e-39 169.1 1020 29.7
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.8e-38 166.4 1966 25.8
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.0e-38 165.6 299 42.5
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 3.9e-38 165.2 1816 25.0
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.3e-37 162.2 675 35.3
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.3e-36 157.9 1697 25.0
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 5.3e-35 154.8 616 34.6
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.4e-34 152.1 437 41.9
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.4e-32 146.7 1855 24.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 7.2e-32 144.4 698 34.2
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 4.6e-31 141.7 1659 23.5
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.5e-29 136.0 198 37.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 5.7e-29 134.8 1636 24.4
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 7.4e-29 134.4 1749 25.1
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 9.7e-29 134.0 1802 23.9
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.2e-28 132.9 1794 25.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 2.6e-26 125.9 656 32.8
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 2.6e-26 125.9 1633 23.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.0e-25 124.0 1777 23.4
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 3.8e-25 122.1 1785 24.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 2.5e-24 119.4 655 33.0
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.2e-24 119.0 639 31.9
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.2e-24 118.6 651 33.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.0e-22 114.0 649 32.2
Medtr8g465700 Medicago truncatula HOM05D000451 ORTHO05D000351 3.3e-21 109.0 112 54.5
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.4e-21 107.8 365 32.6
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 4.1e-19 102.1 237 37.6
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 5.3e-19 101.7 260 33.1
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.5e-18 100.1 305 31.1
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 4.5e-18 98.6 1203 23.2
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.2e-17 96.3 1739 20.8
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.4e-14 87.0 603 29.7
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-13 84.0 87 60.9
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.5e-13 83.6 86 52.3
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 3.7e-12 79.0 350 40.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 2.0e-10 73.2 166 38.6
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.0e-10 73.2 262 39.3
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 6.5e-09 68.2 256 26.2
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 6.5e-09 68.2 663 27.0
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.1e-08 67.4 101 52.5
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.5e-08 66.2 67 44.8
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.5e-08 66.2 177 35.0
Psat7g120880 Pisum sativum HOM05D000120 ORTHO05D030268 5.5e-08 65.1 48 70.8
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.2e-07 63.9 70 41.4
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 2.1e-07 63.2 190 33.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.1e-07 63.2 267 38.6
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.6e-07 62.4 50 68.0
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 1.0e-06 60.8 173 31.8
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 5.2e-06 58.5 520 22.9
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 6.8e-06 58.2 545 25.1


User provided reference genes

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