Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 1.2e-32 142.5 68 100.0
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 2.0e-24 115.2 57 89.5
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 2.0e-24 115.2 57 89.5
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 2.6e-24 114.8 66 84.8
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 3.5e-24 114.4 57 91.2
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.3e-23 112.5 57 87.7
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.9e-23 111.3 57 86.0
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 5.0e-23 110.5 57 84.2
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 5.0e-23 110.5 59 83.1
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 6.5e-23 110.2 57 86.0
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 1.1e-22 109.4 57 86.0
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.5e-22 109.0 57 80.7
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.5e-22 109.0 57 80.7
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.9e-22 108.6 57 84.2
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 2.5e-22 108.2 57 82.5
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.5e-22 108.2 57 82.5
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 2.5e-22 108.2 57 82.5
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 2.5e-22 108.2 57 86.0
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 3.2e-22 107.8 57 84.2
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 4.2e-22 107.5 57 82.5
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 4.2e-22 107.5 57 78.9
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 5.5e-22 107.1 57 82.5
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 7.2e-22 106.7 57 78.9
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 7.2e-22 106.7 57 80.7
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 7.2e-22 106.7 57 80.7
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 7.2e-22 106.7 57 80.7
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 7.2e-22 106.7 57 80.7
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 9.4e-22 106.3 57 75.4
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 9.4e-22 106.3 57 78.9
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 9.4e-22 106.3 66 74.2
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 9.4e-22 106.3 57 82.5
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 9.4e-22 106.3 57 78.9
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 9.4e-22 106.3 57 78.9
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 9.4e-22 106.3 57 78.9
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.2e-21 105.9 57 80.7
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.6e-21 105.5 57 77.2
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 2.1e-21 105.1 57 75.4
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 2.1e-21 105.1 57 78.9
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.1e-21 105.1 57 80.7
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.1e-21 105.1 57 78.9
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 80.7
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 80.7
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 75.4
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 75.4
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 77.2
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 82.5
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 75.4
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 78.9
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 78.9
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.7e-21 104.8 57 78.9
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 3.6e-21 104.4 58 77.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 3.6e-21 104.4 59 81.4
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 4.7e-21 104.0 57 71.9
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 4.7e-21 104.0 63 74.6
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 4.7e-21 104.0 57 77.2
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 4.7e-21 104.0 57 78.9
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 4.7e-21 104.0 57 77.2
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 6.1e-21 103.6 57 77.2
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 6.1e-21 103.6 57 78.9
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 6.1e-21 103.6 56 82.1
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 6.1e-21 103.6 57 78.9
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 8.0e-21 103.2 56 80.4
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 8.0e-21 103.2 57 73.7
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 8.0e-21 103.2 56 80.4
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 8.0e-21 103.2 56 80.4
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 8.0e-21 103.2 57 78.9
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.0e-20 102.8 59 78.0
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 1.0e-20 102.8 56 82.1
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.0e-20 102.8 57 78.9
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.4e-20 102.4 62 72.6
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.4e-20 102.4 57 73.7
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 1.4e-20 102.4 57 78.9
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 1.8e-20 102.1 56 80.4
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.8e-20 102.1 56 76.8
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.8e-20 102.1 56 76.8
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.8e-20 102.1 57 73.7
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.8e-20 102.1 56 80.4
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 2.3e-20 101.7 56 76.8
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.3e-20 101.7 57 78.9
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 2.3e-20 101.7 57 73.7
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.3e-20 101.7 56 80.4
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.0e-20 101.3 56 75.0
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.0e-20 101.3 56 75.0
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.0e-20 100.9 56 73.2
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 4.0e-20 100.9 57 73.7
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 4.0e-20 100.9 62 74.2
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 5.2e-20 100.5 57 73.7
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 5.2e-20 100.5 57 71.9
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 5.2e-20 100.5 57 77.2
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 6.8e-20 100.1 56 76.8
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 8.8e-20 99.8 57 77.2
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 8.8e-20 99.8 57 71.9
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 8.8e-20 99.8 56 78.6
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 8.8e-20 99.8 57 71.9
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.2e-19 99.4 56 80.4
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 2.6e-19 98.2 53 77.4
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 2.6e-19 98.2 53 77.4
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 3.4e-19 97.8 57 71.9
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.4e-19 97.8 56 73.2
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 4.4e-19 97.4 53 75.5
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 9.7e-19 96.3 56 71.4
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-18 95.5 56 76.8
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 1.7e-18 95.5 57 70.2
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 4.8e-18 94.0 57 75.4
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 6.3e-18 93.6 52 75.0
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 8.3e-18 93.2 55 74.5
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.1e-17 92.8 57 68.4
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 1.4e-17 92.4 57 68.4
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.8e-17 92.0 52 76.9
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 7.0e-17 90.1 56 69.6
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 2.7e-16 88.2 53 67.9
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.5e-16 87.4 49 73.5
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 2.9e-15 84.7 53 67.9
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 5.0e-15 84.0 57 64.9
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 1.5e-14 82.4 44 84.1
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.5e-14 82.4 57 66.7
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.6e-13 79.0 56 69.6
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.7e-13 78.2 50 70.0
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 2.3e-12 75.1 55 61.8
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 8.3e-10 66.6 51 60.8
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.4e-09 65.1 56 46.4
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 7.0e-09 63.5 50 60.0
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 5.9e-08 60.5 52 55.8
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.0e-07 59.7 57 43.9
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 3.3e-06 54.7 57 43.9


User provided reference genes

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