Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.5e-164 581.3 303 100.0
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.9e-151 539.3 303 91.7
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-137 493.0 303 86.1
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.8e-133 479.6 301 83.1
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 3.4e-132 475.3 303 84.2
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 4.2e-130 468.4 306 84.0
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 6.1e-129 464.5 304 80.6
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.0e-128 462.2 303 81.5
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 9.7e-127 457.2 306 78.8
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 8.2e-126 454.1 306 78.1
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.3e-123 446.8 303 78.9
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 2.2e-123 446.0 305 77.4
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 7.4e-119 431.0 303 76.2
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 2.2e-118 429.5 304 75.7
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.1e-114 417.2 301 72.1
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 5.5e-114 414.8 295 73.9
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 7.2e-114 414.5 298 70.8
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.6e-113 413.3 298 72.5
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.7e-113 411.8 298 69.8
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 6.7e-112 407.9 298 70.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 2.6e-111 406.0 294 71.8
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 3.3e-111 405.6 298 71.5
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.8e-110 401.7 301 69.1
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 4.1e-109 398.7 298 69.8
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 4.1e-109 398.7 294 71.1
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 7.0e-109 397.9 290 71.0
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.2e-108 397.1 290 70.3
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.6e-108 396.7 304 68.4
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.7e-108 396.0 299 68.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-107 394.0 290 72.1
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.0e-107 394.0 298 66.4
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.7e-107 393.3 305 70.5
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.9e-107 392.5 290 71.7
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.9e-107 392.5 290 71.4
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.9e-107 392.5 290 71.4
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 5.0e-107 391.7 307 69.7
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.9e-106 389.8 290 71.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.9e-106 389.8 294 69.0
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.9e-106 389.8 304 67.1
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.6e-105 386.7 305 69.5
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 2.1e-105 386.3 294 69.7
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.7e-105 385.2 306 68.6
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 6.1e-105 384.8 287 69.3
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 6.1e-105 384.8 287 69.3
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-104 383.6 323 70.3
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 3.0e-104 382.5 300 68.0
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.0e-104 382.1 287 68.6
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 6.8e-104 381.3 294 69.0
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 6.8e-104 381.3 303 68.0
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 8.8e-104 380.9 292 65.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 9.8e-103 377.5 299 69.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.7e-102 376.7 301 66.1
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.8e-101 373.2 294 63.9
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 3.1e-101 372.5 300 64.3
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 7.0e-101 371.3 301 66.8
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 3.5e-100 369.0 301 63.8
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.0e-99 367.5 293 67.9
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.0e-99 367.5 293 67.9
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.0e-99 367.5 293 67.9
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.3e-99 367.1 307 62.2
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.3e-99 366.3 306 65.4
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 9.5e-98 360.9 299 65.2
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 2.1e-97 359.8 300 62.7
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.8e-97 359.4 289 65.7
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 3.6e-97 359.0 300 66.3
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 4.7e-97 358.6 293 65.9
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.0e-96 357.5 295 66.8
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.4e-96 357.1 304 62.8
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.2e-95 354.0 241 75.1
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.0e-95 353.2 291 63.6
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.7e-94 350.1 296 58.4
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 8.3e-94 347.8 297 61.3
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 1.8e-93 346.7 297 64.6
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 5.4e-93 345.1 291 63.9
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 9.2e-93 344.4 295 62.7
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 9.2e-93 344.4 293 63.5
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 2.0e-92 343.2 279 63.4
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.5e-92 342.4 300 60.7
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 5.9e-92 341.7 296 60.1
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.0e-91 340.9 292 63.0
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 6.6e-91 338.2 297 63.0
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.1e-90 337.4 280 62.1
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.5e-90 337.0 301 62.8
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.5e-90 337.0 296 61.1
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.5e-90 336.3 297 62.0
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.5e-90 336.3 297 62.0
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 7.3e-90 334.7 308 58.8
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.2e-89 334.0 280 63.2
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.6e-89 333.6 216 77.3
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 2.1e-89 333.2 306 61.4
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.1e-89 333.2 297 60.9
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 4.7e-89 332.0 299 61.9
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 4.7e-89 332.0 293 57.7
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 6.1e-89 331.6 308 60.7
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 6.1e-89 331.6 306 61.1
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.0e-88 330.9 298 62.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.0e-88 330.9 296 59.8
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.8e-88 330.1 306 61.1
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.8e-88 330.1 249 66.3
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.0e-88 328.9 296 60.1
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 4.0e-88 328.9 299 60.5
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 5.2e-88 328.6 306 60.8
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 2.0e-87 326.6 355 52.4
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.3e-86 323.9 299 61.5
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.2e-86 323.2 265 68.7
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 4.9e-86 322.0 295 60.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.8e-85 320.1 299 57.5
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 5.4e-85 318.5 300 60.7
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.6e-84 317.0 293 60.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.4e-80 303.9 294 55.1
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.1e-80 302.8 300 52.7
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.5e-79 300.4 258 64.0
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.5e-79 300.4 300 51.3
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.7e-78 297.0 299 52.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 8.3e-78 294.7 300 56.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.9e-77 293.5 302 54.0
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.7e-75 287.0 238 61.8
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 4.3e-74 282.3 232 69.0
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 9.5e-74 281.2 279 53.0
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-66 256.9 191 69.6
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.0e-63 246.9 291 48.8
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 5.8e-63 245.4 293 48.8
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.7e-62 243.8 291 51.5
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 8.7e-59 231.5 223 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.9e-54 216.5 215 53.5
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 6.2e-49 198.7 310 39.7
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 4.2e-45 186.0 279 44.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.2e-44 184.5 206 52.9
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.9e-42 177.2 334 36.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 6.9e-40 168.7 100 83.0
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-33 146.7 136 60.3
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-33 146.7 136 60.3
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 4.8e-33 146.0 129 57.4
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.8e-25 120.2 68 79.4
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 3.7e-25 119.8 198 31.8
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.1e-24 116.7 206 32.5
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 5.3e-24 115.9 134 59.7
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.0e-22 111.7 66 74.2
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 8.5e-22 108.6 192 33.3
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 2.8e-17 93.6 63 73.0
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 8.2e-17 92.0 62 72.6
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.4e-16 90.5 98 59.2
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 5.9e-15 85.9 43 93.0
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.2e-14 84.0 77 54.5
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 2.5e-13 80.5 122 45.9
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.2e-13 80.1 50 76.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 5.5e-13 79.3 119 45.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.7e-12 76.3 44 72.7
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-11 74.3 44 72.7
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.1e-10 71.6 39 82.1
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.2e-09 67.4 56 60.7


User provided reference genes

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