Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.2e-133 478.4 241 100.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.0e-111 406.0 214 93.9
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.7e-110 402.9 214 93.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 2.3e-107 392.5 219 88.6
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.7e-105 386.3 211 90.5
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.4e-104 383.3 213 90.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 7.0e-104 380.9 210 88.1
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.0e-103 379.4 210 87.6
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 7.8e-103 377.5 210 86.7
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 2.6e-98 362.5 211 82.9
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 7.5e-98 360.9 214 80.4
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.7e-97 359.8 211 82.0
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 3.7e-97 358.6 214 81.3
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 6.4e-97 357.8 207 83.1
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 8.3e-97 357.5 214 83.2
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.1e-96 357.1 205 82.9
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.4e-96 355.9 205 81.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.4e-96 355.9 205 82.9
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.1e-96 355.1 209 81.3
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 7.0e-96 354.4 209 81.3
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 7.0e-96 354.4 209 81.8
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 7.0e-96 354.4 209 80.4
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.6e-95 353.2 205 82.9
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.5e-95 352.1 209 81.3
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.5e-95 352.1 211 80.6
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.6e-95 351.7 205 82.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.7e-94 349.7 213 77.9
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.9e-94 348.6 211 78.7
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 3.9e-94 348.6 214 79.4
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 5.0e-94 348.2 207 80.2
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 6.6e-94 347.8 212 78.3
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 6.6e-94 347.8 207 79.7
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 8.6e-94 347.4 214 79.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.1e-93 347.1 205 81.5
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.1e-93 347.1 209 79.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.1e-93 347.1 211 79.1
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.1e-93 347.1 209 78.9
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.5e-93 346.7 214 78.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 2.5e-93 345.9 209 79.4
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 3.3e-93 345.5 214 78.5
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.6e-93 344.7 215 77.7
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 5.6e-93 344.7 209 79.4
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 5.6e-93 344.7 211 78.2
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 7.3e-93 344.4 205 79.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 9.5e-93 344.0 214 76.2
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.2e-92 343.6 209 78.0
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.2e-92 343.6 205 80.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.6e-92 343.2 205 80.5
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.6e-92 343.2 209 79.4
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.6e-92 343.2 205 81.0
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.1e-92 342.8 206 79.6
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 2.8e-92 342.4 211 77.3
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 3.6e-92 342.0 207 78.3
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 6.2e-92 341.3 214 76.6
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-91 340.5 205 80.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.1e-91 340.5 214 75.2
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.1e-91 340.5 208 77.4
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.4e-91 340.1 205 78.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.4e-91 340.1 205 80.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 2.3e-91 339.3 217 77.4
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.1e-91 339.0 205 78.5
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.1e-91 339.0 205 78.5
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.1e-91 339.0 205 78.0
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.0e-91 338.6 205 78.5
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.0e-91 338.6 205 78.5
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.0e-91 338.6 205 78.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.0e-91 338.6 214 76.2
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 5.2e-91 338.2 205 78.5
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 5.2e-91 338.2 205 79.0
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 5.2e-91 338.2 203 79.3
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 8.9e-91 337.4 214 77.6
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.5e-90 336.7 205 77.6
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.0e-90 336.3 205 78.0
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 2.6e-90 335.9 205 77.6
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 3.4e-90 335.5 205 76.1
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 4.4e-90 335.1 205 77.6
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 7.5e-90 334.3 205 79.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.9e-89 332.4 235 68.9
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.9e-89 332.4 205 77.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 8.3e-89 330.9 205 77.1
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.9e-88 329.7 219 73.1
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 2.3e-86 322.8 215 73.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.1e-85 320.5 208 75.0
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.1e-85 320.5 203 71.9
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.9e-85 319.7 207 72.9
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 7.3e-85 317.8 210 73.8
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 9.5e-85 317.4 186 80.6
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 8.1e-84 314.3 205 72.7
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 3.1e-83 312.4 214 68.7
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 2.0e-82 309.7 211 71.1
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 5.8e-82 308.1 212 68.4
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.2e-81 306.2 211 73.9
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.9e-80 303.1 213 71.8
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.3e-78 297.0 203 67.5
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.3e-78 297.0 207 67.1
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 5.1e-78 295.0 219 66.7
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 5.6e-77 291.6 157 91.7
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 5.6e-77 291.6 178 80.3
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.1e-76 289.7 205 70.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 2.4e-75 286.2 157 90.4
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 5.2e-75 285.0 178 75.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 2.2e-73 279.6 192 72.9
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.1e-72 277.3 166 78.9
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.4e-72 276.9 166 78.9
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.0e-70 270.8 203 63.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.0e-70 270.8 203 63.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.9e-65 252.7 258 53.1
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 8.7e-62 241.1 157 75.8
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.5e-61 239.6 211 59.7
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 9.9e-58 227.6 158 74.1
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.4e-56 223.8 142 72.5
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 4.2e-56 222.2 211 53.1
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.1e-51 207.6 208 50.5
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 7.6e-50 201.4 182 52.7
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 7.4e-45 184.9 142 64.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.1e-44 183.3 123 69.9
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.1e-44 183.3 123 69.9
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.6e-42 176.4 213 46.5
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.0e-38 164.5 95 83.2
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-37 160.2 223 39.5
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-37 160.2 223 39.5
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.9e-25 119.8 195 37.9
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 3.9e-22 109.4 86 64.0
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.5e-21 107.5 96 58.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.4e-19 100.9 65 70.8
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.5e-18 95.9 53 86.8
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 5.9e-18 95.5 107 50.5
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.7e-17 94.0 73 67.1
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.1e-15 87.0 44 97.7
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 8.0e-15 85.1 53 75.5
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.2e-13 81.3 57 63.2
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 4.8e-12 75.9 70 61.4
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.1e-11 73.2 38 89.5
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 2.0e-10 70.5 53 67.9
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.5e-10 69.7 134 39.6
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 5.9e-10 68.9 43 74.4
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 3.6e-07 59.7 38 81.6
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.7e-07 59.3 33 81.8


User provided reference genes

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