Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 2.0e-239 832.0 429 100.0
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 3.9e-198 694.9 448 82.1
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.2e-193 679.1 459 79.7
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 9.3e-192 673.7 450 80.4
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 5.3e-187 657.9 451 78.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.0e-182 643.7 451 76.5
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 8.8e-182 640.6 459 76.3
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 4.1e-179 631.7 450 77.1
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.0e-178 629.4 448 76.3
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-176 623.6 451 76.7
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 5.5e-176 621.3 455 75.8
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.6e-162 576.6 449 70.2
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.1e-159 566.2 457 68.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 3.3e-157 558.9 447 67.6
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 4.4e-157 558.5 448 68.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 4.1e-155 552.0 460 66.3
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.5e-154 548.5 456 68.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 5.9e-154 548.1 443 67.5
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.3e-153 547.0 431 69.8
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.2e-153 546.2 432 68.1
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 8.5e-153 544.3 437 68.9
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.5e-152 542.7 448 67.0
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.6e-151 540.0 420 71.2
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.6e-151 538.9 453 66.9
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 4.7e-151 538.5 444 67.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 1.4e-150 537.0 441 66.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.3e-150 536.2 440 67.7
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 5.2e-150 535.0 450 64.7
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.4e-149 532.3 438 67.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 3.4e-149 532.3 430 66.3
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 4.4e-149 531.9 461 66.2
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 5.7e-149 531.6 424 67.7
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.5e-149 531.2 438 68.5
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 7.5e-149 531.2 416 69.2
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.2e-148 529.6 458 65.5
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.8e-147 526.6 453 65.8
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.1e-147 525.8 453 65.8
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.2e-146 523.9 442 65.4
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-146 523.9 425 67.8
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 4.5e-146 521.9 448 62.5
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 5.9e-146 521.5 434 64.1
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 5.9e-146 521.5 439 67.0
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.9e-146 521.5 459 63.6
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.9e-146 521.5 459 63.6
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.0e-145 520.8 429 65.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.3e-145 520.4 449 65.7
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.7e-145 520.0 442 65.8
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-145 520.0 426 67.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.7e-145 520.0 462 64.1
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.7e-145 520.0 433 67.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.7e-145 520.0 447 62.2
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 2.9e-145 519.2 436 67.0
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 2.9e-145 519.2 442 65.2
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.5e-144 516.2 452 63.7
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 4.2e-144 515.4 445 62.7
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.1e-143 513.1 446 64.1
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.0e-142 510.8 458 63.1
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 5.2e-142 508.4 415 65.8
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 8.9e-142 507.7 512 57.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.5e-141 506.9 451 62.5
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.6e-141 506.1 433 66.7
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 7.5e-141 504.6 435 65.3
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.7e-140 502.3 479 59.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 4.9e-140 501.9 411 65.9
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 6.3e-140 501.5 436 63.5
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.4e-139 499.6 409 66.0
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-139 499.6 409 66.0
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 9.2e-139 497.7 447 62.9
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.6e-138 496.9 459 63.2
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 2.0e-138 496.5 462 62.8
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.3e-137 493.8 443 61.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-136 490.7 443 61.9
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.3e-136 489.2 445 63.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 4.3e-136 488.8 411 62.3
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 7.3e-136 488.0 455 62.0
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 3.6e-135 485.7 414 63.8
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.3e-134 483.0 419 64.2
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.3e-134 483.0 417 63.5
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 8.3e-132 474.6 444 59.5
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 1.4e-131 473.8 432 61.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.9e-131 473.4 445 60.0
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 4.1e-131 472.2 438 60.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 5.4e-131 471.9 427 62.5
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 5.4e-131 471.9 426 62.4
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.7e-130 469.5 420 62.6
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 7.8e-130 468.0 443 60.0
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 8.6e-129 464.5 410 63.2
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 4.3e-128 462.2 451 58.3
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 7.3e-128 461.5 447 60.4
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.2e-127 460.7 451 58.1
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.1e-127 459.9 458 59.6
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 4.7e-127 458.8 459 58.4
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 6.2e-127 458.4 460 58.3
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.8e-126 456.8 438 59.8
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.3e-126 456.4 564 50.9
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.9e-124 448.7 445 58.7
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 7.0e-123 444.9 394 60.7
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 3.3e-120 436.0 510 51.2
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.2e-119 434.1 408 59.8
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 3.6e-119 432.6 446 58.5
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.3e-116 421.4 410 58.3
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.4e-115 420.6 392 61.0
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.6e-114 417.2 438 55.3
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 2.3e-113 413.3 406 54.7
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.3e-112 409.5 405 56.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.3e-112 409.1 446 55.2
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.2e-111 407.5 326 68.7
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.8e-111 406.4 412 55.1
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 4.7e-111 405.6 455 52.3
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 8.1e-111 404.8 468 51.5
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-110 404.4 429 55.2
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 4.0e-110 402.5 371 62.3
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 5.8e-109 398.7 411 58.9
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.6e-109 398.3 425 55.5
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.6e-104 381.3 415 53.7
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 6.2e-103 378.6 415 52.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 5.8e-101 372.1 377 54.4
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.8e-100 369.4 417 52.3
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.7e-97 360.5 359 56.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.5e-96 356.7 368 54.3
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.2e-90 337.8 372 52.7
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 3.9e-89 332.8 381 52.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.1e-89 332.4 352 54.0
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.4e-86 324.3 377 51.7
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.5e-83 313.5 375 50.4
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 3.9e-81 306.2 583 38.9
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-79 300.4 290 59.3
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.3e-78 295.8 381 49.6
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 3.5e-74 283.1 346 48.0
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.3e-72 276.2 334 50.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 4.1e-70 269.6 317 49.2
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 5.3e-70 269.2 293 55.6
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 8.5e-68 261.9 371 43.7
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.8e-57 227.6 271 51.3
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 3.9e-57 226.5 274 49.6
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.5e-56 224.6 252 54.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.4e-54 217.2 291 45.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 5.9e-53 212.6 243 55.1
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 6.7e-49 199.1 99 97.0
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 4.5e-45 186.4 163 57.1
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.9e-44 183.7 130 73.8
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 8.5e-44 182.2 99 86.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.5e-43 180.6 160 68.1
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.8e-39 167.2 156 66.7
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 1.3e-36 158.3 122 74.6
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 4.0e-33 146.7 191 47.1
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 2.4e-30 137.5 102 67.6
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 5.4e-30 136.3 168 48.8
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-27 128.3 90 83.3
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.1e-26 124.4 161 47.2
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 1.4e-22 111.7 71 73.2
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.4e-22 110.9 66 84.8
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 9.2e-22 109.0 98 59.2
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.9e-21 106.3 58 89.7
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 2.3e-20 104.4 54 88.9
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 8.6e-20 102.4 73 75.3
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 2.1e-18 97.8 146 44.5
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.7e-18 96.7 67 65.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 6.2e-18 96.3 205 35.6
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 4.4e-16 90.1 77 61.0
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 7.5e-16 89.4 63 68.3
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 8.6e-12 75.9 73 57.5
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.8e-09 66.2 42 71.4
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 8.9e-09 65.9 84 52.4
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 1.5e-08 65.1 81 53.1
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 1.3e-07 62.0 97 52.6
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.3e-07 62.0 29 93.1
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.2e-07 61.2 36 83.3
Carub.0008s2144 Capsella rubella HOM05D003179 ORTHO05D003563 8.3e-07 59.3 316 21.8
AT5G60760 Arabidopsis thaliana HOM05D003179 ORTHO05D003563 2.4e-06 57.8 283 21.6
AL8G37350 Arabidopsis lyrata HOM05D003179 ORTHO05D003563 5.4e-06 56.6 325 21.5
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 7.1e-06 56.2 69 49.3
Ciclev10027892m.g Citrus clementina HOM05D003179 ORTHO05D003563 9.2e-06 55.8 317 20.8


User provided reference genes

Program Settings