Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 5.4e-42 173.7 76 100.0
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 2.3e-32 141.7 84 72.6
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 9.5e-31 136.3 83 71.1
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 1.2e-22 109.4 68 72.1
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 1.4e-21 105.9 78 62.8
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 4.0e-21 104.4 79 58.2
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 1.1e-18 96.3 78 55.1
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 1.2e-17 92.8 78 53.8
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 1.6e-17 92.4 78 55.1
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 7.3e-15 83.6 81 45.7
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 1.2e-14 82.8 78 50.0
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 1.1e-13 79.7 77 48.1
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 2.4e-13 78.6 81 45.7
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 8.9e-13 76.6 78 43.6
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.2e-12 76.3 78 43.6
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.2e-12 76.3 78 42.3
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.5e-12 75.9 78 42.3
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 2.0e-12 75.5 78 47.4
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 2.6e-12 75.1 77 45.5
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 7.6e-12 73.6 82 50.0
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 7.6e-12 73.6 62 51.6
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 9.9e-12 73.2 86 46.5
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 9.9e-12 73.2 87 41.4
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 2.2e-11 72.0 82 43.9
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 1.4e-10 69.3 74 43.2
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 1.4e-10 69.3 75 46.7
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.9e-10 68.9 81 40.7
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 7.1e-10 67.0 75 42.7
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 9.2e-10 66.6 86 43.0
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.2e-09 66.2 63 50.8
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.6e-09 65.9 62 45.2
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 2.1e-09 65.5 90 38.9
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.1e-09 65.5 62 48.4
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 2.7e-09 65.1 82 39.0
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 1.0e-08 63.2 52 55.8
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 1.3e-08 62.8 32 75.0
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 1.7e-08 62.4 79 41.8
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 3.0e-08 61.6 62 45.2
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 3.0e-08 61.6 42 59.5
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 3.9e-08 61.2 84 41.7
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.9e-08 61.2 79 39.2
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.9e-08 61.2 79 39.2
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 5.1e-08 60.8 92 38.0
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 5.1e-08 60.8 32 71.9
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 6.6e-08 60.5 30 73.3
BcaB04g17155 Brassica carinata HOM05D010933 ORTHO05D013136 8.7e-08 60.1 75 44.0
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 8.7e-08 60.1 92 38.0
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 8.7e-08 60.1 92 38.0
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 1.1e-07 59.7 85 37.6
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 1.9e-07 58.9 68 41.2
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.9e-07 58.9 40 57.5
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 2.5e-07 58.5 47 59.6
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 2.5e-07 58.5 83 36.1
Sed0019634 Sechium edule HOM05D007609 ORTHO05D009539 2.5e-07 58.5 74 37.8
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 3.3e-07 58.2 80 38.8
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.3e-07 58.2 82 37.8
C03p90620 Brassica napus HOM05D010933 ORTHO05D013136 4.3e-07 57.8 71 42.3
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 4.3e-07 57.8 79 40.5
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 5.6e-07 57.4 36 58.3
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.6e-07 57.4 31 71.0
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 5.6e-07 57.4 31 71.0
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 5.6e-07 57.4 85 36.5
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 7.3e-07 57.0 31 67.7
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 9.6e-07 56.6 28 71.4
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 9.6e-07 56.6 46 56.5
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 1.2e-06 56.2 75 40.0
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 1.2e-06 56.2 79 41.8
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 1.6e-06 55.8 41 51.2
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 2.1e-06 55.5 79 40.5
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 2.1e-06 55.5 41 53.7
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 2.1e-06 55.5 70 37.1
BcaC01g01321 Brassica carinata HOM05D010933 ORTHO05D013136 2.8e-06 55.1 33 63.6
BcaC01g01322 Brassica carinata HOM05D010933 ORTHO05D013136 2.8e-06 55.1 33 63.6
BraA08t32264Z Brassica rapa HOM05D010933 ORTHO05D013136 2.8e-06 55.1 33 63.6
MELO3C024233.2 Cucumis melo HOM05D010933 ORTHO05D013136 2.8e-06 55.1 75 38.7
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 2.8e-06 55.1 39 59.0
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 2.8e-06 55.1 33 60.6
A08p02170 Brassica napus HOM05D010933 ORTHO05D013136 3.6e-06 54.7 33 63.6
BolC3t21384H Brassica oleracea HOM05D010933 ORTHO05D013136 3.6e-06 54.7 33 63.6
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 3.6e-06 54.7 35 60.0
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 3.6e-06 54.7 46 50.0
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 3.6e-06 54.7 33 57.6
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 3.6e-06 54.7 28 67.9
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 3.6e-06 54.7 71 38.0
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 3.6e-06 54.7 79 34.2
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 3.6e-06 54.7 29 65.5
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 4.7e-06 54.3 25 80.0
AT1G52342 Arabidopsis thaliana HOM05D010933 ORTHO05D013136 4.7e-06 54.3 73 41.1
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 4.7e-06 54.3 70 37.1
AL1G60560 Arabidopsis lyrata HOM05D010933 ORTHO05D013136 8.1e-06 53.5 72 38.9
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 8.1e-06 53.5 25 72.0


User provided reference genes

Program Settings