Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 5.7e-98 360.9 183 100.0
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 1.1e-88 330.1 176 93.2
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.3e-86 323.2 184 88.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.8e-84 315.5 184 86.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 4.7e-84 314.7 176 88.6
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 6.1e-84 314.3 176 88.1
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 2.0e-82 309.3 180 85.0
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 3.7e-81 305.1 176 86.9
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 7.8e-79 297.4 184 81.0
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.8e-75 286.2 184 77.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.4e-74 282.0 176 80.1
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 9.8e-74 280.4 183 76.5
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.1e-72 276.9 184 75.0
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 1.8e-72 276.2 176 79.0
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 4.1e-72 275.0 175 78.9
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 4.6e-71 271.6 171 77.8
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 2.3e-70 269.2 187 73.8
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 8.6e-70 267.3 183 74.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.9e-69 266.2 184 73.9
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.9e-69 266.2 177 76.8
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.5e-69 265.8 186 74.2
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.5e-69 265.8 184 72.3
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 5.6e-69 264.6 177 75.1
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 1.6e-68 263.1 181 73.5
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.6e-68 263.1 184 71.7
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.8e-68 262.3 184 72.8
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.8e-68 262.3 184 71.7
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.8e-68 262.3 184 71.7
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.8e-68 262.3 184 71.7
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.6e-68 261.9 184 71.2
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 4.7e-68 261.5 179 73.2
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.7e-68 261.5 184 71.2
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 4.7e-68 261.5 184 71.2
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 6.2e-68 261.2 185 71.4
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 6.2e-68 261.2 184 73.4
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-67 260.4 184 71.2
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 1.4e-67 260.0 183 69.9
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.8e-67 259.6 184 71.2
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.8e-67 259.6 184 71.2
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.8e-67 259.6 184 70.7
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.3e-67 259.2 183 69.9
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.1e-67 258.8 183 69.4
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 3.1e-67 258.8 169 71.6
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 3.1e-67 258.8 184 71.7
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 4.0e-67 258.5 182 67.0
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.2e-67 258.1 184 71.2
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 5.2e-67 258.1 183 70.5
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 6.8e-67 257.7 183 72.1
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 6.8e-67 257.7 171 72.5
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 8.9e-67 257.3 180 71.7
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 8.9e-67 257.3 169 72.2
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.2e-66 256.9 176 70.5
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.0e-66 256.1 189 69.3
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.0e-66 256.1 182 67.0
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 2.0e-66 256.1 184 70.7
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 2.0e-66 256.1 184 69.6
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.4e-66 255.0 178 71.9
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.8e-66 254.6 182 70.3
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 7.5e-66 254.2 184 70.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 9.8e-66 253.8 172 72.1
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.3e-65 253.4 171 75.4
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.3e-65 253.4 184 71.2
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.7e-65 253.1 165 75.8
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.7e-65 253.1 184 70.7
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 2.9e-65 252.3 185 66.5
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.9e-65 252.3 175 70.9
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 3.7e-65 251.9 170 74.7
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 4.9e-65 251.5 181 68.5
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 6.4e-65 251.1 177 71.2
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 6.4e-65 251.1 184 71.2
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.1e-64 250.4 171 74.3
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.2e-64 248.8 165 73.9
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 3.2e-64 248.8 173 70.5
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 4.1e-64 248.4 171 70.2
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 3.5e-63 245.4 146 81.5
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.7e-62 243.0 165 68.5
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 2.3e-62 242.7 184 66.3
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.3e-62 242.7 176 68.2
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.0e-62 242.3 181 65.7
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 3.0e-62 242.3 178 66.9
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-62 241.9 182 67.6
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 5.0e-62 241.5 181 65.2
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 8.6e-62 240.7 181 65.2
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 8.6e-62 240.7 181 64.6
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.9e-61 239.6 178 65.7
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.5e-61 239.2 151 78.1
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.5e-61 239.2 184 65.8
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.5e-61 239.2 184 65.8
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.5e-61 239.2 172 69.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 4.3e-61 238.4 172 68.6
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 5.6e-61 238.0 181 63.5
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 9.5e-61 237.3 168 67.3
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 9.5e-61 237.3 168 66.7
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.8e-60 235.7 175 65.1
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.6e-60 235.3 168 66.7
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 4.7e-60 235.0 184 65.2
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.7e-60 235.0 166 66.3
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 3.1e-59 232.3 168 68.5
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.1e-59 232.3 180 65.0
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 6.8e-59 231.1 168 67.9
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 3.2e-56 222.2 169 61.5
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 4.1e-56 221.9 154 70.8
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 7.1e-56 221.1 170 65.9
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 7.1e-56 221.1 184 63.0
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.6e-55 219.9 121 90.9
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.1e-55 219.5 154 67.5
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.1e-55 219.5 184 63.0
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.7e-55 219.2 178 63.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.0e-55 218.0 162 67.9
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.7e-54 216.5 154 64.3
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 8.6e-54 214.2 183 60.7
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 2.5e-53 212.6 154 64.9
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.5e-53 212.6 162 64.2
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 9.5e-53 210.7 176 58.5
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-52 210.3 166 60.2
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 2.8e-52 209.1 183 60.1
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.7e-52 208.4 163 60.1
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.7e-52 208.4 163 60.1
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.9e-51 204.1 157 60.5
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.9e-49 199.1 181 58.0
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.0e-46 189.1 179 53.1
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.9e-45 186.4 174 54.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 7.3e-45 184.5 125 73.6
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.8e-44 182.6 131 71.0
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.4e-43 179.5 125 71.2
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.1e-43 179.1 179 54.2
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 5.2e-43 178.3 122 67.2
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 4.4e-42 175.3 180 56.1
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.9e-42 174.1 133 58.6
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.2e-41 172.9 172 55.2
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.2e-41 172.9 168 51.2
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.6e-39 166.8 177 46.9
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.7e-39 166.0 158 57.0
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 3.5e-39 165.6 112 77.7
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 6.0e-39 164.9 123 66.7
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 9.0e-35 151.0 154 45.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-34 150.2 180 50.6
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 9.9e-34 147.5 127 61.4
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.3e-33 147.1 120 60.8
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-33 147.1 154 45.5
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 8.4e-33 144.4 108 66.7
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 3.0e-30 136.0 90 72.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 4.3e-29 132.1 180 38.9
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 8.1e-28 127.9 169 39.6
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.5e-26 123.6 80 75.0
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 3.2e-24 115.9 111 48.6
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 9.3e-24 114.4 111 48.6
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 2.7e-23 112.8 154 37.0
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.1e-19 100.9 83 67.5
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.5e-16 89.7 61 67.2
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.3e-14 84.0 48 79.2
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 1.1e-13 80.9 75 48.0
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.3e-13 79.3 65 63.1
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 4.1e-11 72.4 88 44.3
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.2e-09 66.6 57 52.6
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-08 64.3 50 62.0


User provided reference genes

Program Settings