Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 6.8e-59 230.3 107 100.0
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 7.5e-58 226.9 106 98.1
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 1.4e-56 222.6 107 95.3
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.9e-56 222.2 107 95.3
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 3.2e-56 221.5 107 95.3
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 7.3e-53 210.3 107 88.8
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 9.5e-53 209.9 107 90.7
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.2e-52 209.5 97 97.9
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.2e-52 209.5 107 87.9
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 3.6e-52 208.0 107 87.9
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.6e-52 208.0 107 86.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.6e-52 208.0 107 86.0
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 3.6e-52 208.0 96 99.0
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 6.2e-52 207.2 107 89.7
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 6.2e-52 207.2 107 89.7
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 6.2e-52 207.2 107 86.9
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 8.1e-52 206.8 107 87.9
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.8e-51 205.7 107 86.9
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.8e-51 205.7 107 86.9
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.8e-51 205.7 97 95.9
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 3.1e-51 204.9 107 85.0
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 3.1e-51 204.9 107 88.8
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 3.1e-51 204.9 107 85.0
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 4.0e-51 204.5 107 86.0
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 4.0e-51 204.5 107 86.0
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 4.0e-51 204.5 107 86.9
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 5.2e-51 204.1 107 87.9
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 6.8e-51 203.8 107 84.1
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 6.8e-51 203.8 97 93.8
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 6.8e-51 203.8 97 93.8
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 8.9e-51 203.4 107 85.0
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.2e-50 203.0 106 89.6
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 2.0e-50 202.2 107 86.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 3.4e-50 201.4 107 86.9
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 9.9e-50 199.9 107 85.0
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 1.3e-49 199.5 106 86.8
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.9e-49 198.4 108 86.1
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 3.7e-49 198.0 107 82.2
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 1.9e-48 195.7 107 86.0
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 1.9e-48 195.7 107 86.0
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.9e-48 195.7 108 83.3
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 86.0
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 2.4e-48 195.3 108 84.3
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 5.4e-48 194.1 97 87.6
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.2e-47 193.0 107 81.3
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 82.2
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 82.2
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 81.3
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 80.4
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 3.5e-47 191.4 107 80.4
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 80.4
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 80.4
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 108 78.7
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 7.8e-47 190.3 107 80.4
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 7.8e-47 190.3 107 80.4
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 7.8e-47 190.3 106 84.0
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.0e-46 189.9 107 80.4
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 1.0e-46 189.9 100 85.0
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.0e-46 189.9 100 85.0
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 98 87.8
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 98 87.8
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.3e-46 189.5 107 80.4
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 79.4
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 79.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 79.4
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 81.3
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 79.4
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 3.0e-46 188.3 107 83.2
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 85.2
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 85.2
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 85.2
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 85.2
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.9e-46 188.0 108 85.2
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 82.2
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 78.5
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 6.6e-46 187.2 106 79.2
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.6e-46 186.8 96 88.5
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.6e-46 186.8 96 88.5
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 78.5
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.9e-45 185.7 107 77.6
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.9e-45 185.7 97 87.6
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.9e-45 185.7 108 81.5
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.9e-45 185.7 101 84.2
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.5e-45 185.3 108 81.5
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 3.3e-45 184.9 107 78.5
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 3.3e-45 184.9 100 86.0
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.3e-45 184.9 108 80.6
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 4.3e-45 184.5 107 78.5
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 4.3e-45 184.5 107 78.5
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 4.3e-45 184.5 107 78.5
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 4.3e-45 184.5 101 84.2
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 4.3e-45 184.5 101 82.2
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 5.6e-45 184.1 107 77.6
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 5.6e-45 184.1 104 78.8
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 7.3e-45 183.7 109 77.1
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 7.3e-45 183.7 108 80.6
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 77.6
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 77.6
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 77.6
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 2.8e-44 181.8 104 79.8
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.6e-44 181.4 104 77.9
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 3.6e-44 181.4 104 77.9
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 8.1e-44 180.3 99 83.8
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.1e-43 179.9 101 77.2
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.1e-43 179.9 98 85.7
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.1e-43 179.9 101 78.2
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.8e-43 179.1 97 81.4
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.8e-43 179.1 101 82.2
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.8e-43 179.1 105 78.1
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 2.4e-43 178.7 105 80.0
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 3.1e-43 178.3 101 79.2
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 5.2e-43 177.6 103 79.6
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 6.8e-43 177.2 97 80.4
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 6.8e-43 177.2 101 77.2
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 6.8e-43 177.2 96 84.4
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.2e-42 176.4 98 82.7
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.5e-42 176.0 104 76.9
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.5e-42 176.0 107 75.7
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 2.0e-42 175.6 102 80.4
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 5.8e-42 174.1 97 80.4
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 7.6e-42 173.7 97 79.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 7.6e-42 173.7 107 73.8
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 9.9e-42 173.3 101 76.2
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 2.2e-41 172.2 101 74.3
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 4.9e-41 171.0 104 76.0
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.1e-40 169.9 97 79.4
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 3.2e-40 168.3 96 78.1
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 4.1e-40 167.9 101 73.3
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 3.5e-39 164.9 93 75.3
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 3.6e-36 154.8 78 88.5
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.7e-36 154.5 89 76.4
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.8e-35 152.5 94 74.5
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 5.4e-32 141.0 85 78.8
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.5e-29 132.1 68 85.3
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 8.1e-28 127.1 93 61.3
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 8.1e-28 127.1 74 78.4
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.4e-27 126.3 93 61.3
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-27 126.3 74 79.7
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 2.0e-26 122.5 85 64.7
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 7.6e-26 120.6 83 65.1
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 4.9e-25 117.9 72 73.6
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.4e-24 116.3 69 78.3
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 3.2e-24 115.2 70 74.3
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.7e-23 112.1 84 56.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 7.9e-23 110.5 86 58.1
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 1.1e-21 106.7 101 55.4
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 3.1e-19 98.6 52 78.8
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 4.9e-17 91.3 106 42.5
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 6.4e-17 90.9 76 60.5
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 6.7e-14 80.9 54 70.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.9e-13 79.3 50 72.0
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 5.8e-10 67.8 37 83.8
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 5.8e-10 67.8 97 38.1
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 4.9e-09 64.7 37 81.1
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.9e-09 64.7 49 61.2
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 3.9e-06 55.1 28 82.1


User provided reference genes

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