Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 2.9e-274 948.0 493 100.0
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 4.7e-187 658.3 505 72.9
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 2.5e-180 636.0 509 68.8
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 7.8e-158 561.2 590 57.8
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 1.9e-148 530.0 515 61.2
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 5.6e-140 501.9 514 57.8
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 5.8e-129 465.3 571 54.6
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.9e-120 436.4 598 50.5
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 4.0e-114 416.0 543 49.7
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 1.2e-110 404.4 551 48.3
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 3.5e-110 402.9 549 50.3
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 5.8e-105 385.6 667 43.9
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 4.9e-104 382.5 560 45.5
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 3.9e-101 372.9 591 43.8
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.6e-99 367.5 524 45.6
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.5e-97 360.9 577 44.9
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 4.5e-97 359.4 370 56.5
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 3.2e-95 353.2 506 47.8
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 3.8e-88 329.7 557 41.8
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.3e-83 314.7 518 41.9
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 6.3e-83 312.4 530 41.5
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 2.4e-82 310.5 529 43.3
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 6.1e-78 295.8 427 45.7
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 2.8e-75 287.0 513 40.5
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 6.3e-75 285.8 518 40.9
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 3.5e-73 280.0 518 40.9
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.7e-72 277.7 525 39.2
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 7.2e-71 272.3 503 39.2
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 1.6e-70 271.2 462 40.3
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 2.7e-70 270.4 505 41.6
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.0e-69 268.5 518 39.2
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.0e-69 266.9 527 38.9
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.1e-68 265.0 520 39.8
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 4.4e-68 263.1 530 38.3
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.4e-66 258.1 529 36.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 3.5e-65 253.4 525 38.1
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.0e-64 251.9 517 36.0
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 2.9e-64 250.4 515 36.3
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 2.9e-64 250.4 509 37.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 7.2e-63 245.7 527 38.5
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 7.2e-63 245.7 499 37.5
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.2e-62 245.0 531 36.5
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.1e-62 244.2 420 42.9
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 3.6e-62 243.4 516 36.2
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 4.0e-61 240.0 530 35.3
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 5.2e-61 239.6 527 37.2
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 8.8e-61 238.8 498 35.5
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.5e-60 238.0 506 34.2
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.5e-60 238.0 459 41.2
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.0e-60 237.7 488 37.9
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 5.7e-60 236.1 459 41.0
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.7e-60 236.1 533 35.6
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.3e-59 232.6 454 39.4
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.1e-58 231.9 514 34.6
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 4.1e-58 229.9 554 34.7
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.2e-57 228.4 403 39.5
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 3.5e-57 226.9 522 35.2
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 3.5e-57 226.9 521 35.7
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 5.9e-57 226.1 517 34.0
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 7.7e-57 225.7 458 39.5
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 1.3e-56 224.9 507 33.7
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.7e-56 224.6 515 38.3
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 2.2e-56 224.2 457 38.5
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 3.2e-55 220.3 348 40.8
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 7.2e-55 219.2 449 36.7
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 3.6e-54 216.9 504 33.7
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 4.7e-54 216.5 527 37.2
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.8e-53 214.5 526 36.5
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 6.8e-53 212.6 551 33.0
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 6.8e-53 212.6 458 36.9
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 6.8e-53 212.6 518 35.1
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 6.8e-53 212.6 462 35.9
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 8.8e-53 212.2 534 36.5
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.0e-52 211.1 497 34.6
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 4.4e-52 209.9 520 34.0
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 2.2e-51 207.6 456 36.8
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 2.8e-51 207.2 496 35.5
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 4.1e-50 203.4 482 32.8
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 3.5e-49 200.3 463 35.2
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 5.9e-49 199.5 533 33.8
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 1.3e-48 198.4 477 34.2
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.3e-48 197.6 414 38.2
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 5.0e-48 196.4 604 30.3
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 6.6e-48 196.1 357 40.9
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.1e-47 195.3 392 34.9
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 4.2e-47 193.4 403 33.7
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.6e-46 191.4 401 35.7
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 3.6e-46 190.3 425 36.9
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.8e-45 188.0 583 30.2
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 2.3e-45 187.6 452 35.0
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 4.4e-44 183.3 490 35.7
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 9.8e-44 182.2 608 29.3
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.7e-43 181.4 607 29.5
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.7e-43 181.4 607 29.5
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 4.9e-43 179.9 538 33.5
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 4.9e-43 179.9 364 38.7
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.4e-42 178.3 553 30.6
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.8e-42 177.9 607 29.2
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.0e-40 172.2 536 32.3
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.3e-40 171.8 484 31.8
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.9e-39 167.9 376 34.6
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 2.1e-38 164.5 521 31.3
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 8.3e-35 152.5 492 31.1
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 8.3e-35 152.5 253 42.7
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.6e-33 148.3 566 27.6
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 8.6e-32 142.5 502 31.1
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 8.0e-30 136.0 667 26.5
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.5e-28 131.7 540 30.4
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.3e-27 128.6 320 34.1
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 8.3e-27 125.9 545 28.4
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.4e-26 125.2 470 29.8
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 3.6e-22 110.5 209 37.8
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.1e-21 109.0 470 27.2
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 5.4e-18 96.7 79 64.6
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 4.0e-13 80.5 218 32.6
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.2e-12 79.0 72 52.8


User provided reference genes

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