Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25325_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 4.0e-15 87.0 41 100.0
Ca_25323_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 2.0e-14 84.7 41 97.6
Glyma.16G160200 Glycine max HOM05D011211 ORTHO05D012481 3.0e-10 70.9 41 78.0
Ca_25318_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 1.5e-09 68.6 39 82.1
Ca_25320_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 1.9e-09 68.2 39 82.1
Glyma.16G162100 Glycine max HOM05D000162 ORTHO05D000090 1.9e-09 68.2 40 77.5
Glyma.16G160700 Glycine max HOM05D000162 ORTHO05D000090 3.3e-09 67.4 41 75.6
Ca_07240_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 5.6e-09 66.6 41 65.9
Glyma.16G162800 Glycine max HOM05D000162 ORTHO05D000090 5.6e-09 66.6 41 75.6
Glyma.16G139800 Glycine max HOM05D000162 ORTHO05D000090 7.4e-09 66.2 41 73.2
Glyma.16G161900 Glycine max HOM05D000162 ORTHO05D000090 7.4e-09 66.2 40 75.0
Medtr0054s0140 Medicago truncatula HOM05D000162 ORTHO05D000090 7.4e-09 66.2 41 73.2
Glyma.07G100300 Glycine max HOM05D000162 ORTHO05D000090 1.3e-08 65.5 41 73.2
Glyma.16G165400 Glycine max HOM05D000162 ORTHO05D000090 1.3e-08 65.5 38 76.3
Glyma.09G256600 Glycine max HOM05D000162 ORTHO05D000090 2.8e-08 64.3 39 74.4
Medtr3g448620 Medicago truncatula HOM05D000162 ORTHO05D000090 2.8e-08 64.3 40 67.5
Glyma.16G162000 Glycine max HOM05D000162 ORTHO05D000090 3.7e-08 63.9 39 74.4
Medtr6g077800 Medicago truncatula HOM05D000162 ORTHO05D000090 3.7e-08 63.9 41 68.3
Medtr6g079830 Medicago truncatula HOM05D000162 ORTHO05D000090 3.7e-08 63.9 41 68.3
Medtr6g079920 Medicago truncatula HOM05D000162 ORTHO05D000090 3.7e-08 63.9 41 68.3
Ca_25312_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 4.8e-08 63.5 36 80.6
Glyma.07G101300 Glycine max HOM05D000162 ORTHO05D000090 4.8e-08 63.5 40 72.5
Ca_27472_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 6.2e-08 63.2 39 66.7
Thhalv10007258m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 6.2e-08 63.2 41 68.3
Glyma.09G175701 Glycine max HOM05D000162 ORTHO05D000090 6.2e-08 63.2 38 71.1
Medtr0652s0020 Medicago truncatula HOM05D000162 ORTHO05D000090 6.2e-08 63.2 40 65.0
Medtr6g079270 Medicago truncatula HOM05D011211 ORTHO05D012481 6.2e-08 63.2 41 68.3
Glyma.09G176400 Glycine max HOM05D000162 ORTHO05D000090 8.1e-08 62.8 38 71.1
AL1G24080 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.1e-07 62.4 41 68.3
arahy.Tifrunner.gnm1.ann1.ZKBH0L Arachis hypogaea HOM05D000162 ORTHO05D000090 1.4e-07 62.0 41 61.0
BcaB08g34254 Brassica carinata HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 68.3
BcaC07g41701 Brassica carinata HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
A09p63860 Brassica napus HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
C08p47380 Brassica napus HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
Glyma.16G163100 Glycine max HOM05D000162 ORTHO05D000090 1.8e-07 61.6 37 70.3
Medtr6g077540 Medicago truncatula HOM05D000162 ORTHO05D000090 1.8e-07 61.6 40 67.5
QL04p042230 Quercus lobata HOM05D000162 ORTHO05D000090 2.4e-07 61.2 41 65.9
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 3.1e-07 60.8 41 68.3
BraA09t41732Z Brassica rapa HOM05D000162 ORTHO05D000090 3.1e-07 60.8 41 63.4
Carub.0001s1246 Capsella rubella HOM05D000162 ORTHO05D000090 3.1e-07 60.8 41 63.4
Gohir.A10G135300 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.1e-07 60.8 41 61.0
Gohir.D10G131400 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.1e-07 60.8 41 61.0
Gorai.011G145000 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.1e-07 60.8 41 61.0
Medtr6g079460 Medicago truncatula HOM05D000162 ORTHO05D000090 3.1e-07 60.8 39 69.2
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
BcaC07g41680 Brassica carinata HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
C08p47110 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
BolC8t52250H Brassica oleracea HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
Lalb_Chr22g0353621 Lupinus albus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 41 65.9
A09p63620 Brassica napus HOM05D000162 ORTHO05D000090 5.3e-07 60.1 41 63.4
BraA09t41634Z Brassica rapa HOM05D000162 ORTHO05D000090 5.3e-07 60.1 41 65.9
Glyma.10G002800 Glycine max HOM05D000162 ORTHO05D000090 5.3e-07 60.1 40 65.0
LjContig00222g0017251 Lotus japonicus HOM05D000162 ORTHO05D000090 5.3e-07 60.1 40 70.0
Medtr4g107180 Medicago truncatula HOM05D010072 ORTHO05D000090 5.3e-07 60.1 41 65.9
Medtr6g080140 Medicago truncatula HOM05D000162 ORTHO05D012481 5.3e-07 60.1 41 65.9
Medtr7g095300 Medicago truncatula HOM05D000162 ORTHO05D000090 5.3e-07 60.1 41 63.4
VMungo1309G1571 Vigna mungo HOM05D000162 ORTHO05D000090 5.3e-07 60.1 41 65.9
Lalb_Chr19g0129851 Lupinus albus HOM05D000162 ORTHO05D000090 6.9e-07 59.7 41 65.9
AL1G24070 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.0e-07 59.3 41 65.9
Psat1g033480 Pisum sativum HOM05D000162 ORTHO05D000090 9.0e-07 59.3 40 70.0
arahy.Tifrunner.gnm1.ann1.U32GI2 Arachis hypogaea HOM05D000162 ORTHO05D000090 1.2e-06 58.9 40 62.5
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 1.2e-06 58.9 41 63.4
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 1.2e-06 58.9 41 63.4
QL04p040267 Quercus lobata HOM05D000162 ORTHO05D000090 1.2e-06 58.9 41 63.4
AT1G12775 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.5e-06 58.5 41 61.0
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 1.5e-06 58.5 41 63.4
Carub.0001s1231 Capsella rubella HOM05D000162 ORTHO05D000090 1.5e-06 58.5 41 63.4
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.5e-06 58.5 41 61.0
Haze_21400 Corylus avellana HOM05D000162 ORTHO05D000090 1.5e-06 58.5 41 58.5
Thhalv10007046m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.5e-06 58.5 41 63.4
Gohir.D08G229600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 1.5e-06 58.5 38 63.2
Potri.013G130600 Populus trichocarpa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 38 65.8
QL03p014026 Quercus lobata HOM05D000162 ORTHO05D000090 1.5e-06 58.5 41 63.4
Sp3g20240 Schrenkiella parvula HOM05D000162 ORTHO05D000090 1.5e-06 58.5 42 69.0
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 2.0e-06 58.2 41 63.4
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 41 61.0
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 2.0e-06 58.2 41 61.0
Carub.0001s1189 Capsella rubella HOM05D000162 ORTHO05D000090 2.0e-06 58.2 41 63.4
Carub.0001s1241 Capsella rubella HOM05D000162 ORTHO05D000090 2.0e-06 58.2 41 63.4
Ca_25261_v3 Cicer arietinum L. HOM05D011211 ORTHO05D012481 2.0e-06 58.2 41 58.5
Medtr6g065540 Medicago truncatula HOM05D000162 ORTHO05D000090 2.0e-06 58.2 38 68.4
QL03p013273 Quercus lobata HOM05D000162 ORTHO05D000090 2.0e-06 58.2 39 66.7
VMungo0720G2007 Vigna mungo HOM05D000162 ORTHO05D000090 2.0e-06 58.2 40 62.5
AT1G12300 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
A09p63660 Brassica napus HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 63.4
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
Medtr0019s0210 Medicago truncatula HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 58.5
Medtr3g034990 Medicago truncatula HOM05D000162 ORTHO05D000090 2.6e-06 57.8 39 59.0
PSO675G3288 Papaver somniferum HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 58.5
TPR.G3582 Trifolium pratense HOM05D000162 ORTHO05D000090 2.6e-06 57.8 42 61.9
VMungo0464G0274 Vigna mungo HOM05D060093 ORTHO05D000090 2.6e-06 57.8 38 71.1
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 61.0
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 3.4e-06 57.4 41 63.4
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 61.0
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 3.4e-06 57.4 41 63.4
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 61.0
Ca_11439_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 63.2
Gohir.D05G349000 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 60.5
Gorai.009G376400 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.4e-06 57.4 40 57.5
Gorai.009G377400 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.4e-06 57.4 39 61.5
Gorai.009G378500 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.4e-06 57.4 40 57.5
Gorai.011G151200 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 63.2
Lj2g0015487 Lotus japonicus HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 63.2
Medtr6g445300 Medicago truncatula HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 56.1
Medtr8g037320 Medicago truncatula HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 56.1
PSO063G7407 Papaver somniferum HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 56.1
PSO832G2710 Papaver somniferum HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 58.5
Phvul.007G278500 Phaseolus vulgaris HOM05D000162 ORTHO05D000090 3.4e-06 57.4 40 60.0
Psat0s6471g0040 Pisum sativum HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 61.0
QL04p064912 Quercus lobata HOM05D000162 ORTHO05D000090 3.4e-06 57.4 41 58.5
AL1G24190 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.5e-06 57.0 41 61.0
arahy.Tifrunner.gnm1.ann1.LRGX4B Arachis hypogaea HOM05D000162 ORTHO05D000090 4.5e-06 57.0 39 59.0
A09p62260 Brassica napus HOM05D000162 ORTHO05D000090 4.5e-06 57.0 41 61.0
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 4.5e-06 57.0 41 61.0
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 4.5e-06 57.0 41 61.0
Gohir.D05G348800 Gossypium hirsutum HOM05D000162 ORTHO05D000090 4.5e-06 57.0 39 59.0
Gorai.009G380900 Gossypium raimondii HOM05D000162 ORTHO05D000090 4.5e-06 57.0 39 59.0
Medtr3g088950 Medicago truncatula HOM05D003220 ORTHO05D000090 4.5e-06 57.0 40 60.0
QL03p015011 Quercus lobata HOM05D000162 ORTHO05D000090 4.5e-06 57.0 41 58.5
THA.LOC109116384 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 4.5e-06 57.0 41 63.4
EL10Ac4g09379 Beta vulgaris HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
EL10Ac4g09442 Beta vulgaris HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
EL10Ac4g09445 Beta vulgaris HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
EL10Ac4g09448 Beta vulgaris HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
EL10Ac4g09525 Beta vulgaris HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
BcaC07g41727 Brassica carinata HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 61.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 5.8e-06 56.6 41 58.5
Ca_27473_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 5.8e-06 56.6 40 60.0
Haze_21380 Corylus avellana HOM05D000040 ORTHO05D000090 5.8e-06 56.6 41 56.1
Glyma.16G199700 Glycine max HOM05D000162 ORTHO05D009715 5.8e-06 56.6 41 61.0
Gohir.A04G034300 Gossypium hirsutum HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 53.7
Lj2g0007420 Lotus japonicus HOM05D000162 ORTHO05D000090 5.8e-06 56.6 38 68.4
Lj2g0016488 Lotus japonicus HOM05D000162 ORTHO05D000090 5.8e-06 56.6 38 65.8
PSO478G2272 Papaver somniferum HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
PSO675G0651 Papaver somniferum HOM05D000162 ORTHO05D000090 5.8e-06 56.6 41 56.1
AL1G23970 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 61.0
AT1G12620 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 58.5
EL10Ac4g09528 Beta vulgaris HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 56.1
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 61.0
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 61.0
Thhalv10020312m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 65.9
Lj2g0026606 Lotus japonicus HOM05D000162 ORTHO05D000090 7.6e-06 56.2 38 63.2
Medtr6g079300 Medicago truncatula HOM05D011211 ORTHO05D012481 7.6e-06 56.2 40 62.5
Thecc.05G196000 Theobroma cacao HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 63.4
AL1G24180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 61.0
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 61.0
AT1G12700 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 58.5
EL10Ac4g09382 Beta vulgaris HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 58.5
EL10Ac4g09388 Beta vulgaris HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 58.5
EL10Ac4g09850 Beta vulgaris HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 56.1
A09p63470 Brassica napus HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 58.5
BraA09t41697Z Brassica rapa HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 58.5
CiPaw.08G119800 Carya illinoinensis HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 63.4
CiPaw.08G121000 Carya illinoinensis HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 61.0
Ca_25293_v3 Cicer arietinum L. HOM05D011211 ORTHO05D012481 9.9e-06 55.8 38 63.2
Gohir.A04G034500 Gossypium hirsutum HOM05D000162 ORTHO05D000090 9.9e-06 55.8 39 59.0
Gorai.013G060600 Gossypium raimondii HOM05D000162 ORTHO05D000090 9.9e-06 55.8 39 61.5
Lj1g0012010 Lotus japonicus HOM05D000162 ORTHO05D000090 9.9e-06 55.8 42 61.9
Lj2g0002093 Lotus japonicus HOM05D000162 ORTHO05D000090 9.9e-06 55.8 38 68.4
Medtr7g012890 Medicago truncatula HOM05D000162 ORTHO05D000090 9.9e-06 55.8 39 59.0
VMungo0464G0859 Vigna mungo HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 63.4


User provided reference genes

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