Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25323_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 1.8e-15 88.2 42 100.0
Ca_25325_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 2.0e-14 84.7 41 97.6
Glyma.16G160200 Glycine max HOM05D011211 ORTHO05D012481 1.5e-09 68.6 41 75.6
Ca_25318_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 1.9e-09 68.2 39 82.1
Ca_25320_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 2.5e-09 67.8 39 82.1
Glyma.16G160700 Glycine max HOM05D000162 ORTHO05D000090 4.3e-09 67.0 42 73.8
Ca_07240_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 7.4e-09 66.2 42 64.3
Glyma.16G162100 Glycine max HOM05D000162 ORTHO05D000090 1.3e-08 65.5 39 76.9
Glyma.16G165400 Glycine max HOM05D000162 ORTHO05D000090 1.3e-08 65.5 38 76.3
Glyma.07G100300 Glycine max HOM05D000162 ORTHO05D000090 1.6e-08 65.1 42 71.4
Glyma.16G162800 Glycine max HOM05D000162 ORTHO05D000090 2.8e-08 64.3 41 73.2
Glyma.09G256600 Glycine max HOM05D000162 ORTHO05D000090 3.7e-08 63.9 39 74.4
Glyma.16G139800 Glycine max HOM05D000162 ORTHO05D000090 3.7e-08 63.9 41 70.7
Medtr0054s0140 Medicago truncatula HOM05D000162 ORTHO05D000090 3.7e-08 63.9 41 70.7
Ca_25312_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 4.8e-08 63.5 36 80.6
Glyma.16G161900 Glycine max HOM05D000162 ORTHO05D000090 4.8e-08 63.5 39 74.4
Glyma.16G162000 Glycine max HOM05D000162 ORTHO05D000090 4.8e-08 63.5 39 74.4
Glyma.09G175701 Glycine max HOM05D000162 ORTHO05D000090 6.2e-08 63.2 38 71.1
Ca_27472_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 8.1e-08 62.8 39 66.7
Glyma.09G176400 Glycine max HOM05D000162 ORTHO05D000090 8.1e-08 62.8 38 71.1
Glyma.07G101300 Glycine max HOM05D000162 ORTHO05D000090 1.4e-07 62.0 38 73.7
Thhalv10007258m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.8e-07 61.6 42 64.3
Medtr3g448620 Medicago truncatula HOM05D000162 ORTHO05D000090 1.8e-07 61.6 39 66.7
Medtr6g077800 Medicago truncatula HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
Medtr6g079270 Medicago truncatula HOM05D011211 ORTHO05D012481 1.8e-07 61.6 42 64.3
Medtr6g079830 Medicago truncatula HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
Medtr6g079920 Medicago truncatula HOM05D000162 ORTHO05D000090 1.8e-07 61.6 41 65.9
Glyma.16G163100 Glycine max HOM05D000162 ORTHO05D000090 2.4e-07 61.2 37 70.3
AL1G24080 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.1e-07 60.8 42 64.3
Medtr0652s0020 Medicago truncatula HOM05D000162 ORTHO05D000090 4.0e-07 60.5 39 64.1
Medtr6g079460 Medicago truncatula HOM05D000162 ORTHO05D000090 4.0e-07 60.5 39 69.2
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 5.3e-07 60.1 42 64.3
BcaB08g34254 Brassica carinata HOM05D000162 ORTHO05D000090 5.3e-07 60.1 42 64.3
BcaC07g41701 Brassica carinata HOM05D000162 ORTHO05D000090 5.3e-07 60.1 42 61.9
A09p63860 Brassica napus HOM05D000162 ORTHO05D000090 5.3e-07 60.1 42 61.9
C08p47380 Brassica napus HOM05D000162 ORTHO05D000090 5.3e-07 60.1 42 61.9
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 5.3e-07 60.1 42 61.9
arahy.Tifrunner.gnm1.ann1.ZKBH0L Arachis hypogaea HOM05D000162 ORTHO05D000090 6.9e-07 59.7 41 58.5
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 9.0e-07 59.3 42 64.3
BraA09t41732Z Brassica rapa HOM05D000162 ORTHO05D000090 9.0e-07 59.3 42 59.5
Carub.0001s1246 Capsella rubella HOM05D000162 ORTHO05D000090 9.0e-07 59.3 42 59.5
Gohir.A10G135300 Gossypium hirsutum HOM05D000162 ORTHO05D000090 9.0e-07 59.3 42 57.1
Gohir.D10G131400 Gossypium hirsutum HOM05D000162 ORTHO05D000090 9.0e-07 59.3 42 57.1
Gorai.011G145000 Gossypium raimondii HOM05D000162 ORTHO05D000090 9.0e-07 59.3 42 57.1
BcaC07g41680 Brassica carinata HOM05D000162 ORTHO05D000090 1.2e-06 58.9 42 61.9
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 1.2e-06 58.9 42 61.9
C08p47110 Brassica napus HOM05D000162 ORTHO05D000090 1.2e-06 58.9 42 61.9
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 1.2e-06 58.9 42 61.9
BolC8t52250H Brassica oleracea HOM05D000162 ORTHO05D000090 1.2e-06 58.9 42 61.9
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 1.2e-06 58.9 42 61.9
Medtr6g077540 Medicago truncatula HOM05D000162 ORTHO05D000090 1.2e-06 58.9 39 66.7
QL04p042230 Quercus lobata HOM05D000162 ORTHO05D000090 1.2e-06 58.9 41 63.4
A09p63620 Brassica napus HOM05D000162 ORTHO05D000090 1.5e-06 58.5 42 59.5
BraA09t41634Z Brassica rapa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 42 61.9
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 42 61.9
Glyma.10G002800 Glycine max HOM05D000162 ORTHO05D000090 1.5e-06 58.5 38 65.8
Gohir.D08G229600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 1.5e-06 58.5 38 63.2
LjContig00222g0017251 Lotus japonicus HOM05D000162 ORTHO05D000090 1.5e-06 58.5 38 71.1
Medtr4g107180 Medicago truncatula HOM05D010072 ORTHO05D000090 1.5e-06 58.5 42 61.9
Potri.013G130600 Populus trichocarpa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 38 65.8
QL04p040267 Quercus lobata HOM05D000162 ORTHO05D000090 1.5e-06 58.5 42 61.9
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.0e-06 58.2 42 59.5
Lalb_Chr22g0353621 Lupinus albus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 41 63.4
Medtr6g065540 Medicago truncatula HOM05D000162 ORTHO05D000090 2.0e-06 58.2 38 68.4
QL03p014026 Quercus lobata HOM05D000162 ORTHO05D000090 2.0e-06 58.2 42 61.9
AL1G24070 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.6e-06 57.8 42 61.9
Carub.0001s1241 Capsella rubella HOM05D000162 ORTHO05D000090 2.6e-06 57.8 42 61.9
Lalb_Chr19g0129851 Lupinus albus HOM05D000162 ORTHO05D000090 2.6e-06 57.8 42 61.9
Medtr6g080140 Medicago truncatula HOM05D000162 ORTHO05D012481 2.6e-06 57.8 41 63.4
Medtr7g095300 Medicago truncatula HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 61.0
QL03p013273 Quercus lobata HOM05D000162 ORTHO05D000090 2.6e-06 57.8 39 66.7
VMungo0464G0274 Vigna mungo HOM05D060093 ORTHO05D000090 2.6e-06 57.8 38 71.1
VMungo1309G1571 Vigna mungo HOM05D000162 ORTHO05D000090 2.6e-06 57.8 41 63.4
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 3.4e-06 57.4 42 59.5
Ca_11439_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 63.2
Gohir.D05G349000 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 60.5
Gorai.011G151200 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 63.2
Lj2g0015487 Lotus japonicus HOM05D000162 ORTHO05D000090 3.4e-06 57.4 38 63.2
Medtr3g034990 Medicago truncatula HOM05D000162 ORTHO05D000090 3.4e-06 57.4 39 59.0
TPR.G3582 Trifolium pratense HOM05D000162 ORTHO05D000090 3.4e-06 57.4 43 60.5
AT1G12775 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 57.1
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 59.5
Carub.0001s1231 Capsella rubella HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 59.5
Thhalv10007046m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 59.5
Gorai.009G377400 Gossypium raimondii HOM05D000162 ORTHO05D000090 4.5e-06 57.0 39 61.5
Medtr6g445300 Medicago truncatula HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 54.8
Medtr8g037320 Medicago truncatula HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 54.8
PSO063G7407 Papaver somniferum HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 54.8
Psat0s6471g0040 Pisum sativum HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 59.5
QL04p064912 Quercus lobata HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 57.1
Sp3g20240 Schrenkiella parvula HOM05D000162 ORTHO05D000090 4.5e-06 57.0 43 65.1
VMungo0720G2007 Vigna mungo HOM05D000162 ORTHO05D000090 4.5e-06 57.0 42 59.5
arahy.Tifrunner.gnm1.ann1.LRGX4B Arachis hypogaea HOM05D000162 ORTHO05D000090 5.8e-06 56.6 39 59.0
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 5.8e-06 56.6 42 59.5
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 5.8e-06 56.6 42 57.1
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 5.8e-06 56.6 42 57.1
Carub.0001s1189 Capsella rubella HOM05D000162 ORTHO05D000090 5.8e-06 56.6 42 59.5
Gohir.D05G348800 Gossypium hirsutum HOM05D000162 ORTHO05D000090 5.8e-06 56.6 39 59.0
Gorai.009G380900 Gossypium raimondii HOM05D000162 ORTHO05D000090 5.8e-06 56.6 39 59.0
Lj2g0007420 Lotus japonicus HOM05D000162 ORTHO05D000090 5.8e-06 56.6 38 68.4
Lj2g0016488 Lotus japonicus HOM05D000162 ORTHO05D000090 5.8e-06 56.6 38 65.8
Psat1g033480 Pisum sativum HOM05D000162 ORTHO05D000090 5.8e-06 56.6 39 69.2
AT1G12300 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
arahy.Tifrunner.gnm1.ann1.U32GI2 Arachis hypogaea HOM05D000162 ORTHO05D000090 7.6e-06 56.2 39 61.5
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
A09p63660 Brassica napus HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 59.5
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
Haze_21400 Corylus avellana HOM05D000162 ORTHO05D000090 7.6e-06 56.2 41 56.1
Lj2g0026606 Lotus japonicus HOM05D000162 ORTHO05D000090 7.6e-06 56.2 38 63.2
Phvul.007G278500 Phaseolus vulgaris HOM05D000162 ORTHO05D000090 7.6e-06 56.2 42 57.1
arahy.Tifrunner.gnm1.ann1.PJN574 Arachis hypogaea HOM05D000162 ORTHO05D000090 9.9e-06 55.8 42 54.8
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 9.9e-06 55.8 42 57.1
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 9.9e-06 55.8 42 59.5
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 9.9e-06 55.8 42 57.1
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 9.9e-06 55.8 42 59.5
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 9.9e-06 55.8 42 57.1
Ca_25261_v3 Cicer arietinum L. HOM05D011211 ORTHO05D012481 9.9e-06 55.8 41 56.1
Ca_25293_v3 Cicer arietinum L. HOM05D011211 ORTHO05D012481 9.9e-06 55.8 38 63.2
Ca_27473_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 9.9e-06 55.8 42 57.1
Lj2g0002093 Lotus japonicus HOM05D000162 ORTHO05D000090 9.9e-06 55.8 38 68.4
VMungo1309G1784 Vigna mungo HOM05D000162 ORTHO05D000090 9.9e-06 55.8 41 61.0


User provided reference genes

Program Settings