Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1611.7 796 100.0
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1457.6 800 87.8
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1370.1 803 82.6
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1362.1 802 82.3
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1359.4 803 81.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1353.2 803 81.6
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 0.0e+00 1308.1 728 88.0
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1286.9 801 77.0
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1286.9 801 77.0
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1281.5 798 77.8
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1141.3 798 68.3
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1136.7 800 68.4
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1135.6 801 68.7
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 801 68.4
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1131.7 798 67.4
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1131.3 801 68.4
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1118.6 797 67.4
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1109.4 801 67.2
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1101.3 800 68.0
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1096.3 882 62.6
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1095.5 832 64.4
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1090.9 801 65.4
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1089.3 797 65.6
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1087.4 801 65.0
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1081.2 804 65.3
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1080.9 808 64.5
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1079.7 801 65.4
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1077.4 807 64.3
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 5.4e-312 1073.5 799 64.3
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 1.1e-311 1072.8 801 63.4
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 1.4e-310 1069.3 799 64.2
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 1.9e-310 1068.9 799 64.1
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 4.1e-310 1067.8 801 65.2
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 4.1e-310 1067.8 801 64.4
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 2.0e-309 1065.4 802 64.7
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 2.7e-309 1065.1 801 64.7
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.7e-308 1062.4 818 63.0
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 2.3e-308 1062.0 813 63.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 1.1e-307 1059.7 801 64.2
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 1.6e-306 1055.8 801 64.2
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 4.4e-304 1047.7 828 62.7
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 1.7e-303 1045.8 795 64.0
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 2.9e-303 1045.0 800 62.6
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 3.7e-303 1044.6 801 62.7
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 4.9e-303 1044.3 800 62.9
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 1.9e-302 1042.3 800 62.8
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 9.2e-302 1040.0 803 62.9
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 7.8e-301 1036.9 837 60.0
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 1.7e-300 1035.8 798 62.8
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 3.0e-300 1035.0 607 85.2
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 7.3e-299 1030.4 811 61.2
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 4.4e-296 1021.1 801 60.5
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 5.8e-296 1020.8 801 60.9
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 1.7e-295 1019.2 843 58.0
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 8.3e-295 1016.9 776 63.4
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 1.1e-294 1016.5 801 60.0
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 1.9e-294 1015.8 801 60.7
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 2.7e-293 1011.9 804 61.3
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 1.1e-291 1006.5 796 60.2
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 7.3e-291 1003.8 850 57.6
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 1.6e-290 1002.7 801 60.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 1.8e-289 999.2 803 59.8
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 3.1e-289 998.4 803 60.1
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 6.8e-289 997.3 800 60.9
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 4.4e-288 994.6 802 60.5
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 4.1e-286 988.0 803 59.0
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 9.2e-286 986.9 754 62.7
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 2.3e-284 982.2 801 59.9
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 3.9e-284 981.5 803 59.9
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 3.9e-284 981.5 803 60.1
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 2.1e-282 975.7 803 59.5
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 2.1e-282 975.7 833 57.4
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 2.8e-282 975.3 795 59.9
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 2.4e-281 972.2 803 59.3
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.2e-280 969.9 795 59.9
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 1.4e-278 963.0 803 58.9
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 7.8e-277 957.2 803 58.7
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 5.1e-276 954.5 838 56.8
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 1.5e-275 953.0 801 60.2
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 8.1e-274 947.2 846 56.4
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 1.5e-272 943.0 800 56.6
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 2.9e-271 938.7 784 58.5
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.2e-269 933.3 796 57.7
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 5.1e-268 927.9 801 55.7
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 5.3e-265 917.9 812 55.7
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 2.4e-262 909.1 798 57.1
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 3.1e-257 892.1 711 63.6
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.6e-250 869.8 709 63.0
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.7e-226 788.9 606 64.9
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.4e-225 786.9 798 50.5
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.4e-225 786.9 598 63.7
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 2.0e-211 740.0 617 57.9
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.9e-208 728.4 598 61.5
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 2.3e-199 699.9 822 44.9
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 2.4e-193 679.9 824 45.6
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 3.5e-192 676.0 815 44.8
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.9e-161 573.9 533 53.3
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.0e-151 541.6 454 59.0
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 9.6e-150 535.0 449 59.9
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 8.4e-138 495.4 582 44.8
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 1.2e-128 464.9 454 50.7
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.1e-121 441.8 447 48.5
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 1.4e-121 441.4 376 59.0
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.2e-121 439.9 314 64.0
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 7.9e-120 435.6 403 56.1
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.8e-111 407.9 195 90.3
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 5.2e-111 406.4 342 63.5
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.4e-110 402.5 468 45.3
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.3e-74 285.4 308 51.3
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.3e-73 279.6 253 53.8
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 7.8e-67 259.6 148 75.0
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 1.6e-64 251.9 236 56.8
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.3e-63 248.1 488 33.0
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 9.9e-62 242.7 147 70.1
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 7.6e-54 216.5 121 71.9
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 2.7e-51 208.0 196 50.5
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 8.1e-48 196.4 145 55.9
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 2.2e-45 188.3 848 25.0
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.2e-37 161.8 191 46.6
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.2e-35 156.0 93 67.7
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 2.0e-30 138.7 84 70.2
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 1.8e-23 115.5 114 53.5
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.2e-20 104.4 191 34.0
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.5e-20 104.0 52 76.9
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 4.3e-09 67.8 185 30.3
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 5.7e-09 67.4 172 33.1
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 9.7e-09 66.6 52 59.6
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 2.8e-08 65.1 140 32.1
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 2.4e-07 62.0 131 33.6
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 3.1e-07 61.6 278 26.6
Zm00001eb174850 Zea mays HOM05D000563 ORTHO05D000536 3.1e-07 61.6 135 31.9
ClCG03G014380 Citrullus lanatus HOM05D000563 ORTHO05D000536 5.3e-07 60.8 175 29.7
Medtr5g096700 Medicago truncatula HOM05D002322 ORTHO05D002536 6.9e-07 60.5 191 27.7
RcHm_v2.0_Chr3g0496191 Rosa chinensis HOM05D000563 ORTHO05D000536 6.9e-07 60.5 143 32.2
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 6.9e-07 60.5 277 25.6
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.1e-07 60.1 169 29.6
CsaV3_1G041850 Cucumis sativus L. HOM05D000563 ORTHO05D000536 1.2e-06 59.7 175 29.1
MELO3C015600.2 Cucumis melo HOM05D000563 ORTHO05D000536 1.5e-06 59.3 175 29.7
Cpa.g.sc122.18 Carica papaya HOM05D001597 ORTHO05D001512 2.0e-06 58.9 321 24.6
FAN28G2307 Fragaria x ananassa HOM05D000563 ORTHO05D000536 2.0e-06 58.9 219 27.4
Pp3c17_930 Physcomitrium patens HOM05D000563 ORTHO05D000536 2.0e-06 58.9 170 27.6
Pp3c17_931 Physcomitrium patens HOM05D000563 ORTHO05D000536 2.0e-06 58.9 170 27.6
Prupe.7G012100 Prunus persica HOM05D000563 ORTHO05D000536 2.0e-06 58.9 195 27.7
Zm00001eb414130 Zea mays HOM05D000563 ORTHO05D000536 2.0e-06 58.9 197 28.9
Medtr5g096790 Medicago truncatula HOM05D002322 ORTHO05D002536 2.6e-06 58.5 106 34.0
CANSAT54G1779 Cannabis sativa HOM05D000563 ORTHO05D000536 3.4e-06 58.2 208 26.9
FAN26G3181 Fragaria x ananassa HOM05D000563 ORTHO05D000536 3.4e-06 58.2 196 26.5
Pp3c12_280 Physcomitrium patens HOM05D000563 ORTHO05D000536 3.4e-06 58.2 170 29.4
QL01p007331 Quercus lobata HOM05D000563 ORTHO05D000536 3.4e-06 58.2 147 32.0
Ca_09485_v3 Cicer arietinum L. HOM05D001597 ORTHO05D001512 4.5e-06 57.8 246 28.0
HanXRQChr13g0418871 Helianthus annuus HOM05D000563 ORTHO05D000536 5.9e-06 57.4 200 27.5
Hma1.2p1_0384F.1_g140903 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 5.9e-06 57.4 276 25.4
Hma1.2p1_0384F.1_g140909 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 5.9e-06 57.4 276 25.4
HPP92_019701 Vanilla planifolia HOM05D002322 ORTHO05D002536 5.9e-06 57.4 171 32.7
Atru.chr3.2912 Acer truncatum HOM05D000563 ORTHO05D000536 7.7e-06 57.0 176 27.3
CsaV3_3G008330 Cucumis sativus L. HOM05D001597 ORTHO05D001512 7.7e-06 57.0 223 26.9
Os10g0423300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 7.7e-06 57.0 156 32.7


User provided reference genes

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