Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 7.1e-253 877.1 551 100.0
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 9.8e-178 627.5 557 73.2
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 6.4e-177 624.8 562 72.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 3.0e-166 589.3 571 63.4
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 5.6e-157 558.5 561 62.0
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 4.0e-155 552.4 568 62.7
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.1e-148 530.0 552 61.1
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 9.0e-147 524.6 575 62.3
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 4.9e-145 518.8 606 55.8
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 6.4e-145 518.5 554 68.6
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 2.1e-140 503.4 565 63.7
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 2.1e-140 503.4 565 63.7
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.7e-121 440.7 570 53.2
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.4e-118 431.0 572 52.3
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.1e-117 427.9 569 51.7
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.1e-117 427.9 569 51.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.8e-116 423.3 594 46.8
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.8e-115 420.6 597 46.4
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 1.8e-115 420.6 426 57.5
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 3.4e-114 416.4 580 46.9
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 2.9e-113 413.3 568 48.6
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.1e-112 411.4 571 49.6
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 9.4e-112 408.3 424 57.5
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.8e-110 404.1 597 44.9
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 6.7e-110 402.1 597 48.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.6e-109 400.2 428 56.8
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.7e-108 397.5 573 45.5
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 6.3e-108 395.6 582 47.1
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-108 395.6 582 47.1
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.2e-108 395.2 582 46.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.4e-107 394.4 577 47.0
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 4.1e-107 392.9 575 49.0
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 4.1e-107 392.9 613 47.1
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 4.1e-107 392.9 422 55.0
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 7.0e-107 392.1 434 55.3
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.0e-107 392.1 604 46.5
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 7.0e-107 392.1 598 46.7
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.2e-106 391.3 426 55.6
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.6e-106 391.0 577 46.6
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 2.0e-106 390.6 443 55.3
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 5.9e-106 389.0 572 46.5
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 2.9e-105 386.7 571 46.9
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 5.0e-105 386.0 575 47.7
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.9e-104 384.0 598 53.0
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.9e-104 384.0 613 45.2
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.5e-104 383.6 599 42.7
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.2e-104 383.3 390 57.7
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 4.2e-104 382.9 429 55.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.5e-104 382.5 444 53.4
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.2e-103 381.3 610 45.1
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 6.1e-103 379.0 569 46.2
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 2.3e-102 377.1 588 44.4
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 4.0e-102 376.3 620 48.2
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.7e-102 375.6 424 54.2
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 4.4e-101 372.9 567 48.5
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.4e-101 372.9 424 54.0
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.4e-101 372.9 422 53.8
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 5.7e-101 372.5 580 45.7
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 1.7e-100 370.9 585 44.3
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.7e-100 370.9 566 49.1
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 2.2e-100 370.5 585 43.6
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.7e-100 369.8 415 54.9
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 4.8e-100 369.4 437 52.6
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.8e-99 367.5 419 53.7
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 2.0e-98 364.0 426 51.9
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 4.5e-98 362.8 586 46.4
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.7e-97 360.9 566 48.8
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.7e-97 360.9 444 56.1
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.9e-97 360.1 582 44.7
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 6.5e-97 359.0 583 43.2
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 8.5e-97 358.6 417 52.5
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.5e-96 357.8 417 52.0
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.5e-96 357.8 611 44.7
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.5e-96 357.1 417 52.3
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 3.2e-96 356.7 417 51.8
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 3.2e-96 356.7 417 51.8
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 4.2e-96 356.3 552 45.8
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 5.5e-96 355.9 584 44.0
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 7.2e-96 355.5 612 43.3
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 7.2e-96 355.5 435 50.6
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 1.6e-95 354.4 565 49.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 2.1e-95 354.0 597 42.2
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.1e-95 354.0 491 47.7
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.7e-95 353.6 579 48.7
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 2.7e-95 353.6 435 50.3
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 2.7e-95 353.6 574 44.1
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 4.7e-95 352.8 580 51.9
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 8.0e-95 352.1 629 43.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.0e-94 351.7 615 43.1
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 3.0e-94 350.1 421 51.3
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 4.0e-94 349.7 641 40.1
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.5e-93 347.8 583 43.2
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 3.4e-93 346.7 416 51.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 5.7e-93 345.9 573 44.5
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.7e-92 343.2 528 46.4
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 3.7e-92 343.2 426 49.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 6.3e-92 342.4 582 43.8
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 1.4e-91 341.3 591 44.7
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 2.4e-91 340.5 601 43.3
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.7e-89 334.3 577 48.4
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 1.0e-86 325.1 558 48.9
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.1e-83 315.1 513 44.6
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.3e-81 308.1 425 47.5
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.3e-80 303.1 416 46.9
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 7.3e-80 302.4 431 46.2
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 6.1e-79 299.3 426 46.7
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 3.0e-78 297.0 421 46.6
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-77 294.7 405 46.7
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 4.1e-75 286.6 367 48.2
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 8.6e-73 278.9 415 45.1
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 4.4e-69 266.5 576 39.4
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.3e-52 211.8 166 65.7
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 4.6e-50 203.4 409 37.7
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.1e-47 194.5 157 64.3
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.2e-44 184.5 268 45.9
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 6.4e-44 183.0 256 41.8
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 8.4e-44 182.6 378 37.3
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.1e-43 182.2 260 43.8
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 3.5e-42 177.2 427 34.9
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 9.6e-40 169.1 216 46.8
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 3.2e-35 154.1 114 68.4
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.2e-35 153.7 133 61.7
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 3.3e-32 144.1 103 66.0
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 3.3e-32 144.1 103 66.0
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.1e-30 139.0 257 40.5
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 2.0e-29 134.8 374 33.2
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 9.9e-29 132.5 198 42.4
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 9.9e-29 132.5 198 42.4
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.9e-27 128.3 382 37.2
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 3.9e-25 120.6 198 40.4
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 8.7e-17 92.8 154 42.9
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.9e-16 91.7 109 49.5
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.7e-16 89.4 62 66.1
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 2.9e-12 77.8 185 37.3
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 4.3e-08 63.9 396 27.0
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 7.4e-08 63.2 225 27.1
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 2.8e-07 61.2 110 40.9
Lj1g0021214 Lotus japonicus HOM05D000845 ORTHO05D009756 2.4e-06 58.2 146 30.1
arahy.Tifrunner.gnm1.ann1.QT2X3H Arachis hypogaea HOM05D000599 ORTHO05D006883 5.3e-06 57.0 96 44.8
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 6.9e-06 56.6 269 24.9


User provided reference genes

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