Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.9e-109 397.5 196 100.0
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.4e-89 333.2 196 82.7
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 3.7e-87 325.1 193 82.9
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.6e-85 319.7 196 80.1
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.7e-76 289.7 192 75.0
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 5.2e-73 278.1 196 69.4
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 5.2e-73 278.1 196 69.4
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.5e-72 276.6 197 71.6
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.4e-70 268.1 198 69.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.2e-69 266.9 198 70.7
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.6e-69 266.5 213 65.7
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.3e-68 263.5 199 67.8
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.3e-68 263.5 198 69.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 5.6e-67 258.1 196 68.4
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 5.4e-62 241.5 199 65.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 4.6e-61 238.4 199 64.3
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 8.6e-60 234.2 201 66.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.9e-59 233.0 208 62.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 9.5e-59 230.7 207 61.4
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.1e-58 229.6 200 64.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 4.7e-58 228.4 200 62.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-57 226.1 200 61.5
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.1e-57 225.7 200 61.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 8.9e-57 224.2 205 61.0
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.2e-56 223.8 201 58.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.2e-56 223.8 205 60.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.4e-56 222.2 201 58.2
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.4e-56 222.2 201 58.2
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.4e-56 221.9 201 57.7
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.6e-56 221.1 201 58.2
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.2e-55 219.5 214 57.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.9e-54 216.5 202 60.4
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.9e-54 216.5 186 62.9
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 4.2e-54 215.3 208 56.2
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.2e-54 215.3 204 59.3
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 5.4e-54 214.9 202 57.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 7.1e-54 214.5 200 56.5
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.2e-53 213.8 200 58.5
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.1e-53 213.0 201 60.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.1e-53 213.0 201 60.2
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.7e-53 212.6 206 56.8
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.7e-53 212.6 201 58.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.5e-53 212.2 202 59.9
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.8e-53 211.1 207 60.9
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.0e-52 210.7 201 59.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.7e-52 209.9 201 59.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.7e-52 209.9 200 58.0
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 2.3e-52 209.5 204 58.8
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.9e-52 208.8 201 58.7
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.3e-51 205.7 207 54.1
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 7.3e-51 204.5 203 57.1
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.6e-50 203.4 207 55.6
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.1e-50 203.0 201 58.2
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 8.1e-50 201.1 205 54.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.4e-49 200.3 201 55.2
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.8e-49 199.9 205 55.6
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.4e-49 199.5 216 56.5
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.2e-48 197.2 202 55.0
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.2e-48 197.2 219 52.5
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.0e-48 196.4 202 54.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.6e-48 196.1 205 53.2
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.4e-48 195.7 200 56.0
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.4e-48 195.3 201 58.7
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.4e-48 195.3 201 58.7
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 7.6e-48 194.5 202 55.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 7.6e-48 194.5 202 55.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 7.6e-48 194.5 200 55.0
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.3e-47 193.7 211 53.1
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.2e-47 193.0 202 55.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.2e-47 193.0 205 53.2
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 3.8e-47 192.2 201 54.2
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 3.8e-47 192.2 199 55.3
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 3.8e-47 192.2 199 55.3
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.8e-47 192.2 209 52.6
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.9e-47 191.8 198 56.1
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 6.4e-47 191.4 202 53.5
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-46 190.7 199 55.3
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.9e-46 189.9 200 59.5
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.4e-46 189.5 205 55.1
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-46 189.5 204 54.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.4e-46 189.5 200 52.5
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 5.4e-46 188.3 207 52.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 9.3e-46 187.6 200 53.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 9.3e-46 187.6 202 54.0
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.1e-45 186.4 207 52.7
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.1e-45 186.4 204 53.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.6e-45 185.3 202 53.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.0e-45 184.9 200 53.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.8e-45 184.5 200 54.0
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.7e-44 183.3 272 45.6
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.7e-44 183.3 206 52.4
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 3.0e-44 182.6 206 51.9
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.9e-44 182.2 197 55.3
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.1e-43 180.6 196 51.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.5e-43 180.3 201 51.7
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.9e-43 179.9 204 50.5
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.9e-43 179.9 199 50.3
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.9e-43 179.9 199 50.3
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 9.6e-43 177.6 210 51.4
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.6e-42 175.6 206 50.5
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.6e-42 175.6 200 49.0
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.8e-42 175.3 204 52.0
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.1e-41 174.1 205 50.2
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.3e-41 171.8 200 49.5
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 6.9e-41 171.4 196 51.5
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.9e-41 171.4 205 49.8
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 9.0e-41 171.0 204 49.0
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.2e-40 170.6 119 71.4
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.2e-40 170.6 202 48.5
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.4e-40 169.1 205 49.8
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 4.5e-40 168.7 150 66.0
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 4.5e-40 168.7 204 49.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.1e-38 164.1 176 53.4
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-38 164.1 203 45.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-38 163.7 201 48.3
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-38 163.7 203 48.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.4e-38 163.7 203 48.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.4e-38 163.7 203 48.8
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.4e-38 163.7 328 37.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.9e-38 163.3 202 45.5
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.9e-38 163.3 204 49.0
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 2.4e-38 162.9 221 44.8
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 4.2e-38 162.2 197 46.2
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 7.1e-38 161.4 200 45.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.2e-37 160.6 196 48.5
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.7e-37 159.5 202 45.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 7.9e-37 157.9 198 44.9
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.3e-36 157.1 201 48.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-36 156.8 205 46.3
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.8e-36 156.8 205 46.3
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.3e-36 156.4 152 61.2
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.9e-36 155.6 266 41.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 4.3e-35 152.1 204 46.6
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.6e-35 151.8 197 44.7
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 2.8e-34 149.4 92 78.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.8e-34 149.4 195 45.1
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.1e-33 146.0 200 44.5
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 9.0e-33 144.4 92 72.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.6e-32 142.9 175 46.9
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.7e-31 140.2 203 47.3
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.7e-31 140.2 192 46.9
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 3.8e-31 139.0 98 65.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.5e-30 136.3 103 62.1
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.6e-29 133.7 90 68.9
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.0e-28 131.0 153 52.3
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.3e-27 125.9 139 51.8
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.6e-27 125.2 170 42.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 3.7e-26 122.5 119 49.6
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 5.3e-25 118.6 89 60.7
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 9.0e-25 117.9 157 44.6
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.9e-23 112.8 151 47.0
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.8e-23 112.5 200 37.5
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.5e-22 109.8 156 46.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.2e-21 107.5 165 49.7
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 3.0e-20 102.8 165 41.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.8e-18 96.3 131 47.3
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 2.0e-16 90.1 155 41.9
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 2.6e-16 89.7 100 49.0
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 3.2e-14 82.8 73 56.2
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.2e-14 82.4 125 44.0
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 2.7e-13 79.7 96 51.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.4e-12 77.4 54 70.4
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.4e-12 77.4 44 79.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.4e-12 77.4 44 79.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.4e-12 77.4 44 79.5
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.4e-12 77.4 199 34.7
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 2.0e-11 73.6 49 69.4
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 4.5e-08 62.4 124 37.9
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.9e-07 59.7 113 33.6


User provided reference genes

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