Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.1e-57 226.5 119 100.0
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.1e-53 212.2 113 95.6
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.8e-53 211.8 119 93.3
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.8e-52 209.1 113 93.8
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.4e-52 208.8 116 93.1
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 2.4e-52 208.8 119 91.6
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 92.0
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.6e-51 205.3 113 91.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.4e-51 204.9 110 92.7
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 3.4e-51 204.9 113 92.0
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.4e-51 204.5 113 92.9
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 5.8e-51 204.1 110 94.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 7.6e-51 203.8 113 92.9
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 7.6e-51 203.8 113 92.9
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 9.9e-51 203.4 113 92.0
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 9.9e-51 203.4 113 92.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.3e-50 203.0 114 90.4
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.7e-50 202.6 113 92.0
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 91.2
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 91.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 92.0
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.9e-50 201.1 113 92.9
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 8.4e-50 200.3 113 90.3
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 90.3
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.9e-49 199.1 113 90.3
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 91.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 89.4
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.2e-49 198.0 114 88.6
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.2e-49 198.0 114 88.6
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 7.1e-49 197.2 114 88.6
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 7.1e-49 197.2 119 85.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.1e-49 197.2 113 90.3
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 7.1e-49 197.2 122 86.1
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 7.1e-49 197.2 122 86.1
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 7.1e-49 197.2 122 86.1
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.2e-48 196.4 119 87.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 122 86.9
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 86.7
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 87.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.6e-48 196.1 116 87.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 2.1e-48 195.7 109 89.9
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.1e-48 195.7 114 87.7
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 88.5
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.7e-48 195.3 116 86.2
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.7e-48 195.3 120 84.2
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.7e-48 195.3 114 87.7
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 3.5e-48 194.9 116 87.9
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 3.5e-48 194.9 113 86.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.5e-48 194.9 114 88.6
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.6e-48 194.5 114 87.7
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 4.6e-48 194.5 119 84.9
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 88.5
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 4.6e-48 194.5 115 87.8
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 6.0e-48 194.1 114 86.8
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 7.9e-48 193.7 119 86.6
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 7.9e-48 193.7 114 87.7
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 7.9e-48 193.7 112 87.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.0e-47 193.4 114 86.8
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 86.7
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 88.5
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.0e-47 193.4 119 84.0
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.0e-47 193.4 120 84.2
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 86.7
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 86.7
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.7e-47 192.6 114 86.0
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.3e-47 192.2 116 86.2
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 2.3e-47 192.2 115 87.0
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 3.0e-47 191.8 116 85.3
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 3.0e-47 191.8 116 85.3
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.0e-47 191.8 116 85.3
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.9e-47 191.4 116 86.2
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 3.9e-47 191.4 115 86.1
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.9e-47 191.4 114 85.1
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.9e-47 191.4 116 83.6
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.9e-47 191.4 113 86.7
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 3.9e-47 191.4 114 86.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 5.1e-47 191.0 113 87.6
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 5.1e-47 191.0 113 87.6
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 6.6e-47 190.7 113 87.6
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 6.6e-47 190.7 119 85.7
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 6.6e-47 190.7 116 87.1
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.7e-47 190.3 116 85.3
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.7e-47 190.3 116 85.3
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 8.7e-47 190.3 113 86.7
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 8.7e-47 190.3 114 85.1
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.1e-46 189.9 114 86.0
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 85.8
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 86.2
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 86.2
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.5e-46 188.7 119 85.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-46 188.3 115 85.2
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 4.3e-46 188.0 113 85.8
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.6e-46 187.6 119 84.9
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.6e-46 187.6 119 84.9
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.6e-46 187.6 119 84.9
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 5.6e-46 187.6 113 85.0
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 7.3e-46 187.2 119 84.0
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.3e-46 187.2 113 85.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 7.3e-46 187.2 113 85.0
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 9.6e-46 186.8 113 84.1
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.6e-46 186.8 116 82.8
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.6e-46 186.8 116 82.8
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 9.6e-46 186.8 113 84.1
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 9.6e-46 186.8 113 84.1
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.3e-45 186.4 116 83.6
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.6e-45 186.0 116 84.5
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 3.6e-45 184.9 111 85.6
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.6e-45 184.9 116 80.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 8.1e-45 183.7 115 80.9
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.8e-44 182.6 115 83.5
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.1e-44 181.8 113 84.1
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.0e-44 181.4 113 84.1
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 5.3e-44 181.0 115 80.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 9.0e-44 180.3 111 82.0
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 2.0e-43 179.1 105 86.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 2.0e-43 179.1 114 79.8
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 3.4e-43 178.3 111 84.7
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 5.8e-43 177.6 111 82.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 7.6e-43 177.2 113 77.0
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 2.2e-42 175.6 149 67.8
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 3.8e-42 174.9 112 79.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 3.8e-42 174.9 123 76.4
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.6e-40 169.5 109 78.0
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.3e-39 166.4 197 52.8
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.5e-38 162.9 89 94.4
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 4.8e-37 157.9 86 91.9
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 6.2e-37 157.5 89 85.4
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 8.1e-37 157.1 108 74.1
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.5e-35 151.4 88 86.4
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 7.6e-35 150.6 85 90.6
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.0e-34 150.2 123 73.2
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 7.9e-32 140.6 85 87.1
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 5.1e-31 137.9 81 85.2
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 8.7e-31 137.1 105 71.4
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 8.7e-31 137.1 105 71.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.9e-30 136.0 72 90.3
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.3e-30 135.2 73 93.2
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 3.3e-30 135.2 88 76.1
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 4.3e-30 134.8 99 72.7
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.3e-30 134.8 67 100.0
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 9.6e-30 133.7 85 77.6
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.7e-29 131.7 82 82.9
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 3.8e-26 121.7 106 53.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 4.2e-25 118.2 80 78.8
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 9.3e-25 117.1 76 73.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.5e-22 109.8 70 81.4
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.5e-22 109.0 70 81.4
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.6e-21 106.3 71 74.6
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.8e-21 104.8 73 75.3
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.2e-21 104.0 83 68.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 3.4e-19 98.6 107 58.9
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.8e-15 86.3 61 73.8
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 5.3e-12 74.7 48 79.2
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 3.4e-11 72.0 44 84.1
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 7.7e-11 70.9 47 78.7
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.7e-10 69.7 41 85.4
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.7e-10 69.7 41 85.4
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 3.3e-06 55.5 61 57.4
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 7.4e-06 54.3 44 70.5


User provided reference genes

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