Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 0.0e+00 1113.6 583 100.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 8.5e-172 607.8 798 51.1
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 2.3e-169 599.7 727 53.1
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.2e-165 587.4 667 56.7
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.2e-143 513.5 664 51.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 3.3e-139 499.6 696 49.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.8e-137 493.8 726 47.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 9.9e-136 488.0 676 49.9
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-130 471.1 699 47.9
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.7e-127 460.7 680 47.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.2e-127 460.3 673 46.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 3.0e-124 449.9 715 45.5
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 3.6e-122 443.0 558 52.7
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 6.5e-95 352.4 654 41.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 5.7e-91 339.3 665 38.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 9.7e-91 338.6 647 40.0
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.6e-85 319.7 681 38.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.4e-84 318.2 683 37.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.1e-81 308.5 673 36.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.4e-81 307.4 672 37.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 4.1e-81 306.6 674 35.2
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 9.1e-81 305.4 664 36.9
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.0e-79 302.0 721 36.2
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 8.5e-79 298.9 657 37.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-78 298.5 633 37.6
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.4e-78 298.1 673 37.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.4e-78 298.1 705 36.2
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.5e-78 297.4 651 37.2
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 9.4e-78 295.4 671 34.7
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.6e-77 293.5 669 36.3
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.8e-76 291.2 667 35.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.8e-76 291.2 668 37.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.0e-76 290.4 675 36.4
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.9e-76 290.0 657 36.2
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.2e-76 289.7 653 37.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 6.3e-74 282.7 541 41.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.5e-72 276.6 686 33.4
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 4.5e-72 276.6 679 34.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.7e-72 275.8 701 34.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.7e-71 274.6 698 34.5
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 3.8e-71 273.5 418 43.3
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.8e-71 273.5 692 34.2
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.2e-70 270.4 701 33.4
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 3.2e-70 270.4 665 36.2
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.6e-69 268.1 683 36.0
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.7e-69 267.3 707 34.1
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 4.0e-68 263.5 724 33.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 4.0e-68 263.5 719 32.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.2e-68 263.1 666 35.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.8e-68 262.3 691 34.2
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.7e-66 258.1 660 33.9
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 2.2e-66 257.7 706 32.7
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.2e-66 257.7 691 33.3
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-65 255.4 698 33.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.1e-65 253.8 692 34.0
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.1e-65 253.8 615 35.8
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.1e-65 253.8 742 32.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.3e-65 253.1 696 32.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.0e-64 251.1 655 33.9
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.0e-63 248.8 717 32.4
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.9e-63 247.3 706 32.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 6.5e-63 246.1 688 32.1
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.5e-62 244.2 640 33.0
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.2e-62 243.8 390 43.3
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 4.7e-61 240.0 655 33.4
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.7e-61 240.0 664 33.7
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.0e-60 237.3 709 32.7
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.0e-60 237.3 662 31.9
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 9.8e-59 232.3 627 33.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.7e-58 231.5 669 33.5
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.2e-58 231.1 625 33.0
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 6.3e-58 229.6 641 32.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 8.3e-58 229.2 426 39.0
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.1e-57 228.8 722 31.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 4.1e-57 226.9 663 32.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.6e-56 224.9 659 33.2
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 5.9e-56 223.0 626 32.7
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.3e-55 221.9 719 30.5
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.7e-55 221.5 658 32.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.5e-54 217.6 637 31.9
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 9.5e-54 215.7 696 33.0
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.7e-53 213.4 630 33.0
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.8e-52 211.5 648 32.3
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.0e-51 208.0 783 28.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.4e-51 207.2 665 31.3
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.7e-51 206.5 658 32.2
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.9e-50 203.4 781 28.8
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 4.1e-49 200.3 788 27.8
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.4e-49 199.9 738 29.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.0e-48 198.0 659 31.9
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 2.0e-48 198.0 737 29.2
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 4.5e-48 196.8 690 29.7
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 5.9e-48 196.4 586 31.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.8e-48 196.1 730 29.2
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-47 195.3 792 27.8
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.3e-47 195.3 573 33.3
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.5e-46 191.0 807 27.4
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 6.8e-44 183.0 679 30.2
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-42 176.8 662 29.9
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.4e-41 174.5 841 26.5
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.4e-41 173.3 540 31.9
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 7.0e-41 172.9 650 29.8
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 7.0e-41 172.9 837 26.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.6e-40 171.8 669 29.0
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.9e-40 169.9 862 26.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 2.3e-39 167.9 726 28.9
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 3.0e-39 167.5 736 28.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 8.6e-39 166.0 456 30.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.5e-38 165.2 548 29.7
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.6e-38 163.3 398 31.7
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 8.0e-37 159.5 602 29.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.3e-36 157.9 644 29.0
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.0e-36 157.1 727 27.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-33 149.1 559 30.1
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.9e-33 148.3 619 27.6
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.9e-33 148.3 607 27.8
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.9e-33 148.3 597 29.0
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.4e-33 146.7 329 34.7
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.7e-32 144.4 218 40.4
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.3e-31 142.1 502 30.1
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-31 141.7 610 29.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.1e-29 134.8 670 27.0
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.1e-28 131.0 651 26.4
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.6e-27 127.9 196 41.8
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 9.8e-27 125.9 260 31.9
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.7e-26 124.0 411 28.0
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.3e-26 122.9 164 43.3
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 4.6e-24 117.1 321 34.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.3e-23 115.5 437 29.7
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.9e-22 111.7 406 34.0
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-17 95.9 531 28.1
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.6e-15 86.7 196 36.2
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.6e-13 82.0 84 50.0
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.1e-13 81.6 195 33.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 6.9e-12 76.6 198 35.4
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 6.9e-12 76.6 198 35.4
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 6.4e-10 70.1 196 34.2
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-08 65.1 107 39.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 7.8e-08 63.2 314 28.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.0e-07 62.8 86 45.3
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.3e-07 62.4 47 59.6
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-07 62.0 47 59.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.6e-07 60.1 103 42.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 8.7e-07 59.7 109 35.8
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.5e-06 58.9 432 23.6
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 1.5e-06 58.9 136 33.8
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 3.3e-06 57.8 115 34.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.3e-06 57.8 50 48.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.3e-06 57.4 635 23.1


User provided reference genes

Program Settings