Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.8e-246 855.5 442 100.0
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 4.0e-198 694.9 503 73.2
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 2.7e-194 682.2 449 79.7
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 6.7e-193 677.6 448 79.9
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 8.4e-188 660.6 447 78.7
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.0e-185 653.7 447 78.3
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.1e-182 643.7 398 82.4
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.8e-174 616.3 448 72.3
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.1e-174 615.1 447 74.3
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 2.0e-173 612.8 447 70.7
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.3e-172 610.1 451 71.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.7e-172 609.8 448 71.9
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.8e-172 608.6 448 71.9
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-171 606.7 448 71.2
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.9e-171 606.3 448 71.4
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 5.1e-169 598.2 426 73.7
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.8e-167 592.4 447 70.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.7e-167 592.0 447 69.4
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.8e-166 589.7 451 70.1
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.4e-166 589.3 447 68.7
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.6e-165 585.9 451 68.1
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 7.7e-165 584.3 443 69.3
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.0e-164 583.9 445 69.4
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.7e-164 583.2 450 69.3
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 3.8e-164 582.0 448 68.1
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 8.5e-164 580.9 445 69.0
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 4.7e-162 575.1 429 70.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.0e-161 573.9 462 65.4
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.0e-161 572.4 423 70.4
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.3e-160 568.9 456 67.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.2e-159 566.2 448 67.0
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.3e-159 564.7 440 67.7
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.1e-158 563.9 447 66.0
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 3.1e-158 562.4 450 66.2
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 5.3e-158 561.6 463 66.1
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 4.5e-157 558.5 446 65.5
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.2e-156 556.2 454 65.4
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 5.0e-156 555.1 458 64.0
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 8.5e-156 554.3 427 68.6
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.4e-155 553.5 448 65.4
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.5e-155 552.7 371 79.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 4.2e-155 552.0 421 68.4
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-154 550.1 449 64.8
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.6e-154 550.1 449 65.9
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.1e-154 549.7 434 66.6
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.4e-153 547.0 440 65.9
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.9e-153 545.4 440 65.7
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 5.2e-153 545.0 450 63.1
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 8.8e-153 544.3 452 65.0
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.1e-152 543.9 425 66.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.5e-152 543.5 423 68.1
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 3.3e-152 542.3 448 63.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.7e-151 538.9 437 66.6
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 4.8e-151 538.5 415 67.2
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.8e-151 538.5 427 67.4
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 6.3e-151 538.1 443 65.0
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-150 537.3 397 70.3
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 7.0e-150 534.6 443 64.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 5.9e-149 531.6 450 64.4
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 7.7e-149 531.2 404 68.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.0e-148 530.8 402 68.4
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-148 530.4 441 63.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.9e-147 526.6 458 62.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 4.2e-147 525.4 447 61.7
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 7.2e-147 524.6 441 63.0
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 9.4e-147 524.2 448 62.3
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.6e-146 523.5 474 59.5
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.7e-146 522.7 449 62.6
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.4e-145 520.4 412 65.0
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 6.8e-145 518.1 333 78.4
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.2e-144 517.3 447 61.7
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.5e-144 516.9 416 64.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.5e-144 516.9 422 66.6
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 9.7e-144 514.2 388 68.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.7e-143 513.5 474 59.9
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.7e-143 513.5 454 60.8
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.8e-143 512.7 439 61.7
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.8e-142 510.0 422 61.6
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.8e-142 510.0 492 58.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 5.3e-142 508.4 351 74.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.3e-142 508.4 445 61.1
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 7.0e-142 508.1 452 61.5
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 9.1e-142 507.7 469 60.6
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.2e-141 507.3 450 60.0
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 3.5e-141 505.8 452 60.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.0e-140 504.2 404 64.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 2.9e-140 502.7 376 68.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 5.0e-140 501.9 451 59.9
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-139 500.4 464 59.3
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-139 500.4 469 58.8
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.7e-138 496.1 438 61.0
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 4.7e-138 495.4 428 61.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 6.1e-138 495.0 427 63.0
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-137 493.8 436 60.8
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.8e-137 493.4 441 61.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.0e-136 490.0 426 63.4
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.6e-136 489.6 432 61.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.4e-136 488.8 442 60.2
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.5e-136 488.0 442 60.2
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.7e-135 486.9 333 71.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 5.4e-134 481.9 430 60.0
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 5.4e-134 481.9 430 60.0
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.7e-133 479.6 420 60.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 3.5e-133 479.2 491 56.6
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.9e-132 476.1 460 58.0
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.5e-131 473.0 427 58.5
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 5.5e-131 471.9 381 65.4
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.6e-130 469.2 423 59.3
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.0e-129 466.1 380 66.1
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 7.0e-126 454.9 434 58.1
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 7.3e-123 444.9 399 58.9
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.2e-122 444.1 469 55.0
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.8e-122 443.0 434 56.7
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.2e-121 438.7 447 55.5
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.2e-121 438.7 455 50.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 6.8e-121 438.3 413 56.9
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.0e-120 436.8 449 54.6
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-119 434.1 449 54.3
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.9e-119 433.0 417 53.2
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.6e-116 421.8 512 50.0
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 3.3e-115 419.5 322 65.8
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 5.6e-115 418.7 435 49.7
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 6.2e-114 415.2 277 76.2
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.4e-113 414.1 372 59.7
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-113 412.9 424 53.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.0e-112 410.2 422 50.7
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.6e-112 409.8 264 77.3
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 3.4e-112 409.5 442 53.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 7.1e-110 401.7 308 66.6
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 4.6e-109 399.1 352 59.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 2.8e-106 389.8 286 71.7
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 3.6e-106 389.4 403 51.9
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.3e-105 386.7 326 58.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-101 373.2 401 53.1
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 4.6e-101 372.5 405 49.4
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 6.0e-101 372.1 399 53.4
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 5.6e-99 365.5 401 52.9
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.8e-98 363.2 345 56.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.4e-97 360.9 413 51.1
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 5.2e-97 359.0 389 52.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-90 336.7 367 51.2
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-90 336.7 428 49.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 3.6e-90 336.3 367 51.2
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.4e-89 333.6 367 48.0
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 4.0e-89 332.8 460 42.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.4e-86 322.4 356 50.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 9.3e-86 321.6 274 62.4
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 6.6e-84 315.5 349 51.0
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 3.6e-82 309.7 207 75.4
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.7e-79 300.8 374 48.7
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 7.1e-62 242.3 448 39.1
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-60 237.7 447 38.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.3e-58 231.5 476 33.2
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 5.1e-52 209.5 200 55.5
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.3e-50 204.9 153 66.7
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.4e-49 201.4 144 68.1
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.6e-40 170.6 145 65.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 6.1e-37 159.5 166 53.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.4e-33 147.5 94 71.3
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 3.1e-33 147.1 141 54.6
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-29 134.8 119 58.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 7.5e-27 125.9 98 62.2
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 9.8e-27 125.6 148 52.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.2e-26 124.4 133 52.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.1e-25 122.1 204 39.2
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 7.0e-25 119.4 94 62.8
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 9.1e-25 119.0 104 61.5
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.7e-24 117.5 101 60.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 5.9e-24 116.3 94 62.8
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-21 107.8 305 31.5
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 5.2e-20 103.2 67 80.6
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.7e-15 88.2 199 33.7
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.0e-15 86.7 120 43.3
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 5.0e-15 86.7 72 65.3
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 2.5e-14 84.3 120 41.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 9.5e-14 82.4 121 43.8
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 8.9e-12 75.9 196 32.7
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.6e-11 74.3 69 50.7
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-11 74.3 69 50.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 4.4e-11 73.6 96 45.8
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 3.2e-09 67.4 49 61.2
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.6e-08 65.1 39 76.9
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 5.6e-06 56.6 94 40.4


User provided reference genes

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