Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 3.4e-186 654.8 327 100.0
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 2.5e-165 585.5 327 89.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 5.7e-165 584.3 327 88.1
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.3e-164 583.2 329 87.5
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 4.1e-163 578.2 327 87.2
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.5e-162 576.2 327 87.8
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-161 573.5 329 85.4
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-161 573.5 329 85.4
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.2e-159 566.6 328 86.0
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.3e-157 558.5 329 83.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 5.7e-149 531.2 327 82.0
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 4.5e-146 521.5 327 79.5
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.8e-139 499.6 328 76.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 5.5e-136 488.0 329 74.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.2e-135 486.9 329 73.9
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.2e-135 486.9 327 74.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.0e-134 483.8 327 73.7
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.3e-134 482.6 332 73.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.0e-134 482.3 327 73.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.2e-133 480.3 329 73.3
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 8.3e-132 474.2 324 72.8
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.1e-131 473.8 338 72.2
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.1e-131 471.9 349 70.2
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 4.1e-131 471.9 340 71.2
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.7e-130 469.2 336 72.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 5.9e-130 468.0 328 72.0
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.3e-129 466.8 339 71.7
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.3e-129 466.1 341 69.8
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 2.3e-129 466.1 336 71.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 6.6e-129 464.5 327 70.9
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.1e-128 463.8 328 71.0
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 5.5e-128 461.5 386 63.7
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.6e-127 459.9 338 70.1
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.8e-127 459.1 344 68.9
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 8.0e-127 457.6 338 69.5
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 8.0e-127 457.6 329 71.1
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 6.8e-126 454.5 331 68.6
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.0e-125 453.0 327 67.3
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 4.4e-125 451.8 385 62.6
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 9.8e-125 450.7 331 70.7
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.7e-124 449.9 327 69.4
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.9e-124 448.4 331 68.6
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 8.3e-124 447.6 331 68.0
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.1e-123 447.2 285 77.5
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.4e-123 446.8 328 70.7
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.4e-123 446.8 337 68.8
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.4e-123 446.8 390 61.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.8e-123 446.4 348 64.4
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.0e-121 440.7 332 68.4
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.3e-121 440.3 384 61.2
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.0e-121 438.3 332 68.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 5.0e-121 438.3 332 67.8
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.9e-120 436.4 327 68.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 2.5e-120 436.0 328 69.2
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 3.3e-120 435.6 327 66.4
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 5.6e-120 434.9 383 61.1
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.8e-119 432.6 335 68.1
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.4e-118 430.3 375 60.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 3.1e-118 429.1 347 64.6
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.2e-118 428.3 335 66.0
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.2e-117 427.2 363 60.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.2e-117 427.2 358 62.8
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.6e-117 426.0 334 66.2
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 9.8e-117 424.1 257 77.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.7e-116 423.3 331 65.3
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.9e-116 422.5 333 63.7
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-115 420.6 388 58.2
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.4e-115 420.2 328 65.9
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.9e-115 419.9 287 70.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.4e-115 419.5 257 76.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.4e-115 419.5 303 70.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 5.4e-115 418.3 353 61.5
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 3.5e-114 415.6 382 59.7
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 3.6e-111 405.6 339 61.1
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.6e-111 405.6 347 64.0
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 4.7e-111 405.2 330 63.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-111 404.4 214 87.4
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-110 403.7 207 89.4
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.0e-109 399.8 389 56.8
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 7.5e-109 397.9 391 56.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.2e-107 392.5 279 70.6
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.3e-105 387.1 353 60.1
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 3.0e-105 386.0 333 59.2
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 8.6e-105 384.4 327 60.6
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.9e-102 374.4 291 65.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 2.0e-101 373.2 334 58.4
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 3.4e-101 372.5 328 58.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 7.5e-101 371.3 313 59.4
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.7e-100 370.2 327 58.1
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.2e-100 369.8 326 58.6
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.9e-100 369.4 293 65.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 3.5e-98 362.5 327 57.8
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.3e-97 360.5 356 55.6
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.3e-97 360.5 317 60.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.7e-97 360.1 366 54.6
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.0e-97 359.4 376 54.3
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 6.6e-97 358.2 483 45.3
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.5e-96 357.1 327 57.2
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.1e-95 353.2 325 57.2
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.4e-91 340.5 342 54.4
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.9e-91 340.1 327 54.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.7e-90 336.3 386 49.7
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 7.3e-88 328.2 328 52.7
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 7.3e-88 328.2 328 52.7
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 4.8e-87 325.5 328 52.4
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 3.1e-86 322.8 339 51.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.7e-84 317.0 327 51.4
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.1e-83 314.3 331 51.4
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-83 313.9 328 50.9
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.9e-83 313.5 281 59.4
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 5.4e-83 312.0 327 50.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-82 310.5 328 50.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 4.6e-82 308.9 246 67.9
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 7.8e-82 308.1 334 50.6
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.1e-81 305.4 333 51.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 4.5e-77 292.4 174 79.3
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.3e-71 274.2 159 77.4
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.3e-70 268.9 167 73.1
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.5e-69 265.8 311 45.7
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 9.3e-67 258.1 249 55.0
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.4e-62 243.4 303 44.9
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.1e-58 228.8 153 72.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.3e-57 227.6 150 75.3
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 4.3e-56 222.6 371 37.5
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.1e-50 202.2 188 60.1
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.5e-45 186.0 119 75.6
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.7e-45 185.3 172 57.6
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.0e-36 156.0 100 75.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 3.0e-33 146.7 322 32.9
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 2.4e-30 137.1 101 65.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.3e-28 131.3 80 75.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.2e-26 124.8 122 59.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.3e-23 114.8 124 54.8
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 8.5e-20 102.1 55 74.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.6e-16 90.5 102 52.9
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 7.5e-16 89.0 48 85.4
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-15 87.4 55 80.0
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 4.1e-14 83.2 75 53.3
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.3e-12 78.2 108 46.3
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.8e-06 57.8 452 19.5


User provided reference genes

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