Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25000_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 2.7e-263 911.4 435 100.0
Ca_30801_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 2.7e-263 911.4 435 100.0
Medtr1g046210 Medicago truncatula HOM05D006015 ORTHO05D007816 2.1e-231 805.4 436 86.9
Psat6g109000 Pisum sativum HOM05D006015 ORTHO05D007816 4.3e-229 797.7 437 88.1
TPR.G23976 Trifolium pratense HOM05D006015 ORTHO05D007816 7.4e-229 797.0 436 86.0
Lj6g0021297 Lotus japonicus HOM05D006015 ORTHO05D007816 2.7e-223 778.5 433 84.5
VMungo0720G1520 Vigna mungo HOM05D006015 ORTHO05D007816 3.1e-219 765.0 438 83.6
Phvul.007G239000 Phaseolus vulgaris HOM05D006015 ORTHO05D007816 2.2e-217 758.8 438 82.0
Glyma.10G128800 Glycine max HOM05D006015 ORTHO05D007816 1.1e-216 756.5 437 81.7
Lalb_Chr03g0036841 Lupinus albus HOM05D006015 ORTHO05D007816 1.4e-216 756.1 435 82.1
Lalb_Chr01g0011281 Lupinus albus HOM05D006015 ORTHO05D007816 6.7e-206 720.7 436 78.4
COL.COLO4_33334 Corchorus olitorius HOM05D006015 ORTHO05D007816 2.2e-196 689.1 431 75.9
Thecc.01G195800 Theobroma cacao HOM05D006015 ORTHO05D007816 6.3e-196 687.6 437 74.8
QL04p068533 Quercus lobata HOM05D006015 ORTHO05D007816 1.1e-195 686.8 433 74.1
CiPaw.04G196900 Carya illinoinensis HOM05D006015 ORTHO05D007816 1.2e-194 683.3 435 73.6
Cfa014228 Carpinus fangiana HOM05D006015 ORTHO05D007816 4.5e-194 681.4 431 75.4
Gohir.A11G149000 Gossypium hirsutum HOM05D006015 ORTHO05D007816 5.9e-194 681.0 432 74.1
Duzib211G0350 Durio zibethinus HOM05D006015 ORTHO05D007816 7.7e-194 680.6 434 72.8
Gorai.007G166200 Gossypium raimondii HOM05D006015 ORTHO05D007816 5.0e-193 677.9 433 73.7
Gohir.D11G156100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 3.3e-192 675.2 435 72.9
MD09G1126500 Malus domestica HOM05D006015 ORTHO05D007816 5.5e-192 674.5 431 74.2
MD17G1116800 Malus domestica HOM05D006015 ORTHO05D007816 1.6e-191 672.9 429 74.1
Ciclev10015287m.g Citrus clementina HOM05D006015 ORTHO05D007816 2.8e-191 672.2 433 74.1
Duzib138G1954 Durio zibethinus HOM05D006015 ORTHO05D007816 8.0e-191 670.6 437 72.5
Dinv26607 Davidia involucrata HOM05D006015 ORTHO05D007816 3.0e-190 668.7 432 72.7
Gohir.D07G198100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 5.2e-190 667.9 425 72.7
Gorai.001G221700 Gossypium raimondii HOM05D006015 ORTHO05D007816 2.0e-189 666.0 425 72.5
CSS0001355 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 5.7e-189 664.5 434 71.0
CSS0036117 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 5.7e-189 664.5 434 71.0
Sabra14G0127200 Salix brachista HOM05D006015 ORTHO05D007816 2.8e-188 662.1 424 72.9
Eucgr.H00879 Eucalyptus grandis HOM05D006015 ORTHO05D007816 4.9e-188 661.4 432 71.5
Manes.12G065800 Manihot esculenta HOM05D006015 ORTHO05D007816 1.1e-187 660.2 434 71.4
Potri.014G167200 Populus trichocarpa HOM05D006015 ORTHO05D007816 1.4e-187 659.8 435 72.4
Nn3g19725 Nelumbo nucifera HOM05D006015 ORTHO05D007816 1.8e-187 659.4 425 72.7
FAN09G3933 Fragaria x ananassa HOM05D006015 ORTHO05D007816 7.0e-187 657.5 424 72.2
Rhsim04G0027900 Rhododendron simsii HOM05D006015 ORTHO05D007816 1.6e-186 656.4 433 72.1
FAN02G2834 Fragaria x ananassa HOM05D006015 ORTHO05D007816 2.7e-186 655.6 424 71.9
HanXRQChr11g0329021 Helianthus annuus HOM05D006015 ORTHO05D007816 2.7e-186 655.6 425 72.2
RcHm_v2.0_Chr2g0156011 Rosa chinensis HOM05D006015 ORTHO05D007816 3.5e-186 655.2 425 71.3
CSS0038739 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 7.8e-186 654.1 435 70.6
FAN05G5154 Fragaria x ananassa HOM05D006015 ORTHO05D007816 1.1e-184 650.2 424 71.2
FAN14G1195 Fragaria x ananassa HOM05D006015 ORTHO05D007816 1.1e-184 650.2 424 71.2
CANSAT64G2535 Cannabis sativa HOM05D006015 ORTHO05D007816 1.9e-184 649.4 436 71.6
PGR083G2314 Punica granatum HOM05D006015 ORTHO05D007816 1.9e-184 649.4 433 71.1
FvH4_6g40640 Fragaria vesca HOM05D006015 ORTHO05D007816 2.5e-184 649.0 424 71.0
Oeu064356.1 Olea europaea HOM05D006015 ORTHO05D007816 2.1e-183 646.0 422 70.1
Rhsim06G0176400 Rhododendron simsii HOM05D006015 ORTHO05D007816 4.7e-183 644.8 428 70.1
Cpa.g.sc136.28 Carica papaya HOM05D006015 ORTHO05D007816 8.0e-183 644.0 422 70.9
Peaxi162Scf00802g00022 Petunia axillaris HOM05D006015 ORTHO05D007816 1.0e-182 643.7 431 68.7
Cc08_g02360 Coffea canephora HOM05D006015 ORTHO05D007816 1.8e-182 642.9 436 69.3
Aqoxy1G04250 Aquilegia oxysepala HOM05D006015 ORTHO05D007816 2.3e-182 642.5 437 70.3
PGSC0003DMG400017397 Solanum tuberosum HOM05D006015 ORTHO05D007816 3.1e-182 642.1 426 69.0
ECA236G0403 Erigeron canadensis HOM05D006015 ORTHO05D007816 4.0e-182 641.7 428 70.8
DCAR_019683 Daucus carota HOM05D006015 ORTHO05D007816 5.2e-182 641.3 430 69.5
CAN.G177.8 Capsicum annuum HOM05D006015 ORTHO05D007816 6.8e-182 641.0 427 68.9
MELO3C024194.2 Cucumis melo HOM05D006015 ORTHO05D007816 8.9e-182 640.6 427 69.3
Sopen07g024010 Solanum pennellii HOM05D006015 ORTHO05D007816 2.6e-181 639.0 426 69.2
Nitab4.5_0001867g0080 Nicotiana tabacum HOM05D006015 ORTHO05D007816 1.7e-180 636.3 429 68.5
Solyc07g045470.3 Solanum lycopersicum HOM05D006015 ORTHO05D007816 4.9e-180 634.8 426 68.5
THA.LOC104808847 Tarenaya hassleriana HOM05D006015 ORTHO05D007816 6.4e-180 634.4 427 70.7
ClCG02G002870 Citrullus lanatus HOM05D006015 ORTHO05D007816 2.4e-179 632.5 428 68.5
CsaV3_7G002510 Cucumis sativus L. HOM05D006015 ORTHO05D007816 4.1e-179 631.7 434 67.3
Lsat_1_v5_gn_7_96920 Lactuca sativa HOM05D006015 ORTHO05D007816 4.1e-179 631.7 426 69.5
TWI18G0302 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 7.0e-179 630.9 429 69.7
Atru.chr6.3393 Acer truncatum HOM05D006015 ORTHO05D007816 9.2e-179 630.6 429 69.2
TAR629G2010 Trochodendron aralioides HOM05D006015 ORTHO05D007816 1.6e-178 629.8 425 69.6
Sc21g0000520 Simmondsia chinensis HOM05D006015 ORTHO05D007816 6.0e-178 627.9 425 68.9
Migut.K00073 Erythranthe guttata HOM05D006015 ORTHO05D007816 1.0e-177 627.1 427 67.9
PSO302G0043 Papaver somniferum HOM05D006015 ORTHO05D007816 1.3e-177 626.7 425 68.5
Nitab4.5_0001701g0190 Nicotiana tabacum HOM05D006015 ORTHO05D007816 3.9e-177 625.2 421 69.1
TWI75G1720 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 2.5e-176 622.5 423 70.2
PSO210G7679 Papaver somniferum HOM05D006015 ORTHO05D007816 3.3e-176 622.1 422 68.7
Sp3g23770 Schrenkiella parvula HOM05D006015 ORTHO05D007816 7.3e-176 620.9 428 66.4
MSTRG.10825 Avicennia marina HOM05D006015 ORTHO05D007816 1.2e-175 620.2 426 67.1
Sed0014474 Sechium edule HOM05D006015 ORTHO05D007816 2.8e-175 619.0 432 67.6
Sed0012767 Sechium edule HOM05D006015 ORTHO05D007816 1.4e-174 616.7 432 67.6
Thhalv10002538m.g Eutrema salsugineum HOM05D006015 ORTHO05D007816 1.8e-174 616.3 429 67.1
Atru.BG.41.p Acer truncatum HOM05D006015 ORTHO05D007816 2.3e-174 615.9 355 77.2
MBI16_g07770_MAGBIO Magnolia biondii HOM05D006015 ORTHO05D007816 2.3e-174 615.9 426 67.4
Gohir.A07G191800 Gossypium hirsutum HOM05D006015 ORTHO05D007816 5.2e-174 614.8 425 68.7
Actinidia07868 Actinidia chinensis HOM05D006015 ORTHO05D007816 1.2e-173 613.6 432 68.5
AT2G05320 Arabidopsis thaliana HOM05D006015 ORTHO05D007816 2.0e-173 612.8 429 66.7
AL3G42830 Arabidopsis lyrata HOM05D006015 ORTHO05D007816 1.3e-172 610.1 429 66.9
MSTRG.6445 Avicennia marina HOM05D006015 ORTHO05D007816 2.9e-172 609.0 430 67.7
Carub.0003s2938 Capsella rubella HOM05D006015 ORTHO05D007816 3.7e-172 608.6 431 66.4
BcaB08g34500 Brassica carinata HOM05D006015 ORTHO05D007816 1.2e-170 603.6 421 66.5
AUR62029116 Chenopodium quinoa HOM05D006015 ORTHO05D007816 1.2e-170 603.6 428 66.4
Hma1.2p1_0545F.1_g175930 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 3.5e-170 602.1 356 76.4
Ah.01g002640 Amaranthus hybridus HOM05D006015 ORTHO05D007816 3.0e-169 599.0 355 75.5
vmacro12084 Vaccinium macrocarpon HOM05D006015 ORTHO05D007816 3.9e-169 598.6 354 76.8
CARHR103100 Cardamine hirsuta HOM05D006015 ORTHO05D007816 6.6e-169 597.8 357 75.6
ATR0827G116 Amborella trichopoda HOM05D006015 ORTHO05D007816 1.5e-168 596.7 438 63.2
BcaC01g03165 Brassica carinata HOM05D006015 ORTHO05D007816 1.9e-168 596.3 421 66.3
C03p55440 Brassica napus HOM05D006015 ORTHO05D007816 7.3e-168 594.3 421 65.6
BolC3t17819H Brassica oleracea HOM05D006015 ORTHO05D007816 7.3e-168 594.3 421 66.0
Lj1P796T26 Lonicera japonica HOM05D006015 ORTHO05D007816 2.8e-167 592.4 344 76.7
A03p44610 Brassica napus HOM05D006015 ORTHO05D007816 6.8e-166 587.8 421 65.1
BraA03t13594Z Brassica rapa HOM05D006015 ORTHO05D007816 6.8e-166 587.8 421 65.1
Lj8P135T89 Lonicera japonica HOM05D006015 ORTHO05D007816 2.0e-165 586.3 340 76.8
SGA_v2.0_scaffold94G28455 Striga asiatica HOM05D003478 ORTHO05D004196 2.2e-164 582.8 430 65.3
Aa31LG8G11520 Aethionema arabicum HOM05D006015 ORTHO05D007816 6.4e-164 581.3 422 65.6
HPP92_001839 Vanilla planifolia HOM05D006015 ORTHO05D007816 1.3e-161 573.5 358 70.9
CDE05G3376 Ceratophyllum demersum HOM05D006015 ORTHO05D007816 6.6e-161 571.2 428 63.3
unitig_37.g12711 Utricularia gibba HOM05D006015 ORTHO05D007816 1.5e-160 570.1 432 61.8
SHI10157 Sapria himalayana HOM05D006015 ORTHO05D007816 1.6e-159 566.6 405 65.4
Zm00001eb192260 Zea mays HOM05D006015 ORTHO05D007816 2.1e-159 566.2 363 69.7
Os02g0798100 Oryza sativa ssp. japonica HOM05D006015 ORTHO05D007816 1.8e-158 563.1 362 69.3
Nn1g02851 Nelumbo nucifera HOM05D006015 ORTHO05D007816 3.1e-158 562.4 418 63.6
Glyma.20G080200 Glycine max HOM05D006015 ORTHO05D007816 3.4e-157 558.9 288 86.1
AUR62015007 Chenopodium quinoa HOM05D006015 ORTHO05D007816 9.9e-157 557.4 407 65.4
SEGI_05803 Sequoiadendron giganteum HOM05D006015 ORTHO05D007816 1.9e-155 553.1 374 66.0
Actinidia18833 Actinidia chinensis HOM05D006015 ORTHO05D007816 9.6e-152 540.8 432 61.8
Migut.J01779 Erythranthe guttata HOM05D006015 ORTHO05D007816 4.0e-150 535.4 428 61.2
Prupe.3G198000 Prunus persica HOM05D006015 ORTHO05D007816 2.7e-146 522.7 283 80.9
Pp3c12_25130 Physcomitrium patens HOM05D006015 ORTHO05D007816 1.6e-143 513.5 392 60.5
Pp3c8_6700 Physcomitrium patens HOM05D006015 ORTHO05D007816 1.0e-137 494.2 357 62.5
SMO358G0350 Selaginella moellendorffii HOM05D006015 ORTHO05D007816 5.3e-134 481.9 356 61.2
Mapoly0086s0006 Marchantia polymorpha HOM05D006015 ORTHO05D007816 2.8e-127 459.5 356 60.4
SalBow1G4868 Salvia bowleyana HOM05D006015 ORTHO05D007816 1.5e-117 427.2 324 63.9
MSTRG.26113 Avicennia marina HOM05D006015 ORTHO05D007816 6.5e-100 368.6 209 78.5
Hma1.2p1_0545F.1_g175940 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 3.2e-99 366.3 209 77.5
SalBow6G1876 Salvia bowleyana HOM05D006015 ORTHO05D007816 3.2e-99 366.3 215 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1590 Anthoceros agrestis HOM05D006015 ORTHO05D007816 2.3e-97 360.1 356 51.1
CBR_g52107 Chara braunii HOM05D006015 ORTHO05D000002 1.3e-92 344.4 346 50.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.5e-59 233.8 260 50.8
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 1.0e-52 211.8 402 37.6
Nn5g28971 Nelumbo nucifera HOM05D006015 ORTHO05D007816 1.0e-28 132.1 95 60.0
EL10Ac8g18725 Beta vulgaris HOM05D006015 ORTHO05D007816 2.1e-26 124.4 80 68.8
Actinidia35205 Actinidia chinensis HOM05D001060 ORTHO05D000905 1.4e-25 121.7 198 35.9
Aa31LG8G11540 Aethionema arabicum HOM05D006015 ORTHO05D007816 4.5e-16 90.1 111 44.1
CSS0018959 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D112597 1.4e-06 58.5 58 48.3
Aa31LG8G11530 Aethionema arabicum HOM05D006015 ORTHO05D059074 7.2e-06 56.2 77 41.6


User provided reference genes

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