Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 0.0e+00 1662.1 857 100.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 0.0e+00 1340.5 865 82.5
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 0.0e+00 1303.5 865 80.9
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 0.0e+00 1302.0 867 79.5
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 0.0e+00 1189.9 900 72.3
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1157.1 902 71.5
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1148.7 901 70.9
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 0.0e+00 1133.2 905 69.7
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 0.0e+00 1096.3 886 68.4
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 8.4e-309 1063.5 910 65.9
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 8.4e-309 1063.5 910 65.9
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 8.4e-293 1010.4 890 64.2
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.1e-273 946.8 884 62.1
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 3.0e-258 895.6 906 56.8
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 4.4e-257 891.7 857 61.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 2.1e-251 872.8 898 56.2
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 4.8e-248 861.7 903 56.0
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 2.4e-247 859.4 900 54.7
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.2e-243 847.0 872 58.9
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.8e-242 843.2 907 54.6
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 7.5e-241 837.8 903 55.3
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.7e-240 836.6 912 55.2
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 8.3e-240 834.3 893 54.9
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.4e-239 832.8 889 57.0
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.2e-238 830.5 908 53.5
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.7e-238 829.3 906 54.5
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 2.1e-235 819.7 906 53.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 5.2e-234 815.1 887 53.8
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 6.8e-234 814.7 903 52.9
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.4e-233 812.0 903 52.8
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 9.8e-233 810.8 911 54.0
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.3e-232 810.4 901 53.1
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-232 810.4 675 67.1
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.4e-231 807.0 902 52.7
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 7.0e-231 804.7 907 52.1
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 4.0e-226 788.9 910 52.5
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.3e-224 783.9 910 52.4
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.7e-224 783.5 905 52.5
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.8e-223 780.0 905 52.2
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.8e-223 780.0 910 52.2
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.1e-223 779.2 906 52.3
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 4.5e-222 775.4 913 50.6
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.3e-221 773.9 843 53.9
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 2.5e-220 769.6 893 51.8
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 2.8e-219 766.1 905 52.7
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.0e-218 764.2 904 50.8
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 4.1e-215 752.3 861 52.7
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.5e-212 743.0 906 50.6
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 4.3e-212 742.3 907 49.7
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.2e-211 740.7 913 49.6
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.8e-211 739.6 904 49.4
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.6e-209 733.0 984 47.4
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 3.4e-209 732.6 871 49.9
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.3e-208 730.7 910 48.1
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 6.4e-208 728.4 841 51.1
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 4.1e-207 725.7 896 49.3
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 6.6e-205 718.4 873 52.2
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 6.8e-202 708.4 905 48.5
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 3.7e-200 702.6 901 46.6
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.4e-199 700.7 838 51.7
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.4e-199 700.7 906 49.1
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 4.6e-198 695.7 904 48.9
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 3.4e-193 679.5 875 48.7
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.9e-192 675.6 921 45.3
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 2.1e-187 660.2 838 47.4
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 8.1e-187 658.3 866 47.2
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.6e-185 651.7 913 44.8
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 1.3e-184 651.0 880 46.7
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.6e-182 644.0 883 45.3
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.6e-182 644.0 920 43.9
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 4.6e-182 642.5 920 43.7
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 3.9e-181 639.4 920 44.1
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 6.2e-179 632.1 895 45.7
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.4e-178 630.2 897 43.9
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.6e-174 617.5 905 44.1
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.8e-170 604.0 885 44.2
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 2.4e-170 603.6 878 43.8
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 3.4e-169 599.7 915 42.0
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 6.5e-168 595.5 871 45.2
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 2.7e-166 590.1 759 49.0
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 4.5e-161 572.8 948 41.6
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 5.0e-160 569.3 967 40.6
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.9e-159 567.4 948 41.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.5e-159 567.0 904 41.6
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.2e-159 566.6 904 41.5
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.5e-158 563.1 626 54.5
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 2.5e-156 557.0 824 43.4
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 4.3e-156 556.2 976 38.3
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 9.7e-156 555.1 980 39.5
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 8.2e-155 552.0 966 38.6
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 5.3e-154 549.3 851 41.1
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 6.9e-154 548.9 861 44.8
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.2e-153 548.1 866 41.9
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.9e-153 545.8 808 42.8
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 7.7e-153 545.4 894 39.9
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 8.5e-152 542.0 803 43.7
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 7.2e-151 538.9 878 41.5
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.8e-149 534.3 915 40.2
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.1e-148 531.6 852 42.3
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.0e-148 530.8 848 42.6
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.7e-144 517.7 849 42.3
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 3.6e-142 510.0 839 42.3
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.9e-135 487.6 890 40.0
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 5.5e-135 486.1 893 40.1
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 7.2e-135 485.7 887 40.1
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.8e-133 481.1 884 40.5
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.5e-132 478.0 911 39.1
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 2.0e-132 477.6 881 39.6
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 3.3e-132 476.9 888 39.8
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 5.7e-132 476.1 879 39.5
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 5.7e-132 476.1 879 39.5
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 5.3e-130 469.5 886 39.5
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 5.3e-130 469.5 886 39.5
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 5.9e-129 466.1 877 38.8
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 7.7e-129 465.7 882 40.8
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.5e-127 461.5 880 40.1
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.9e-120 437.2 712 43.7
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 9.4e-119 432.2 672 44.9
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.2e-116 425.2 881 38.1
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.1e-106 392.1 858 35.0
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 4.6e-105 386.7 848 35.7
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 6.8e-101 372.9 920 34.3
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.9e-99 367.5 624 41.3
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 4.6e-97 360.1 858 33.7
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.6e-94 351.7 945 33.2
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 3.4e-92 344.0 931 32.1
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.1e-82 312.4 934 30.9
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 6.0e-81 306.6 239 72.0
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.8e-77 295.0 918 30.3
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 3.2e-74 284.3 215 69.8
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.0e-72 279.3 511 40.5
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 1.7e-64 251.9 585 37.6
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 3.6e-62 244.2 409 39.9
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.5e-39 169.1 181 50.3
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 4.3e-39 167.5 138 68.1
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.7e-35 155.6 229 41.9
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.9e-35 154.8 390 34.9
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 8.5e-35 153.3 933 26.5
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.2e-28 132.9 599 28.4
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 2.2e-27 128.6 210 41.0
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.4e-24 119.4 326 31.6
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.6e-23 115.2 357 32.2
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.8e-22 110.9 549 26.8
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 5.7e-15 87.4 152 40.8
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 9.1e-13 80.1 144 38.2
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 3.8e-11 74.7 438 23.1
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 6.5e-11 73.9 500 23.2
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.7e-09 68.6 92 43.5
HPP92_019094 Vanilla planifolia HOM05D002036 ORTHO05D001913 4.4e-07 61.2 254 25.2
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 6.3e-06 57.4 955 20.3
HPP92_019812 Vanilla planifolia HOM05D002036 ORTHO05D001913 6.3e-06 57.4 253 25.7


User provided reference genes

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