Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.5e-192 676.0 333 100.0
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 4.3e-184 647.9 331 95.8
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 6.1e-183 644.0 331 94.3
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.2e-175 619.8 333 91.0
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 2.8e-175 618.6 333 91.3
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 1.1e-174 616.7 333 90.1
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 1.4e-174 616.3 333 90.1
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.3e-172 609.8 333 88.9
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 1.7e-172 609.4 333 88.6
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 6.4e-172 607.4 333 88.9
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.3e-172 607.1 333 88.9
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 3.2e-171 605.1 333 88.6
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 5.4e-171 604.4 333 88.6
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 5.4e-171 604.4 333 88.3
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 1.2e-170 603.2 333 87.7
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 2.1e-170 602.4 333 87.1
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 4.6e-170 601.3 333 87.1
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 4.6e-170 601.3 333 87.1
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 4.6e-170 601.3 333 88.6
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 1.3e-169 599.7 333 88.3
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 1.7e-169 599.4 333 86.5
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 1.7e-169 599.4 333 87.4
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.7e-169 599.4 333 87.4
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.7e-169 599.4 333 87.7
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.3e-169 599.0 333 87.4
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 3.0e-169 598.6 333 86.2
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 3.9e-169 598.2 333 86.8
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 3.9e-169 598.2 333 88.0
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 3.9e-169 598.2 333 87.1
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 3.9e-169 598.2 333 87.7
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 5.1e-169 597.8 333 87.4
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 6.6e-169 597.4 333 87.7
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 8.6e-169 597.0 333 86.2
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 8.6e-169 597.0 333 86.2
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 8.6e-169 597.0 333 86.2
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 8.6e-169 597.0 333 86.2
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 1.1e-168 596.7 333 86.8
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.1e-168 596.7 333 87.4
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 1.1e-168 596.7 333 86.5
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.5e-168 596.3 333 85.9
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 1.5e-168 596.3 333 85.9
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 1.5e-168 596.3 333 86.2
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 1.5e-168 596.3 333 86.5
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 1.5e-168 596.3 333 87.7
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.5e-168 596.3 333 86.8
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 2.5e-168 595.5 333 86.5
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.3e-168 595.1 333 87.7
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 3.3e-168 595.1 333 86.5
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.3e-168 595.1 333 87.1
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 3.3e-168 595.1 333 86.8
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 9.5e-168 593.6 333 87.1
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 9.5e-168 593.6 333 86.2
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 1.2e-167 593.2 333 86.2
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 1.2e-167 593.2 333 86.2
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 1.2e-167 593.2 333 86.5
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.6e-167 592.8 333 86.2
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.1e-167 592.4 333 86.2
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 4.7e-167 591.3 333 86.8
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 4.7e-167 591.3 333 85.6
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 4.7e-167 591.3 333 86.2
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 8.1e-167 590.5 333 87.1
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 1.1e-166 590.1 333 86.2
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 1.1e-166 590.1 333 85.9
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.8e-166 589.3 333 86.2
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 2.3e-166 589.0 333 85.9
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 2.3e-166 589.0 333 86.2
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 3.1e-166 588.6 333 84.7
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 3.1e-166 588.6 333 86.2
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 4.0e-166 588.2 333 85.6
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 6.8e-166 587.4 333 85.9
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 3.4e-165 585.1 333 85.3
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 3.4e-165 585.1 333 85.0
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 4.4e-165 584.7 333 84.7
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 4.4e-165 584.7 333 84.4
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 5.8e-165 584.3 334 87.4
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 5.8e-165 584.3 332 86.4
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 5.8e-165 584.3 333 84.1
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 1.3e-164 583.2 332 86.4
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 2.9e-164 582.0 334 87.1
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 2.9e-164 582.0 333 85.3
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 3.7e-164 581.6 333 85.0
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 4.9e-164 581.3 333 85.0
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 6.4e-164 580.9 318 89.3
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 6.4e-164 580.9 318 89.3
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.1e-163 580.1 333 85.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.1e-163 580.1 333 85.0
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 2.4e-163 578.9 333 84.7
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 2.4e-163 578.9 333 82.9
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 4.1e-163 578.2 328 85.1
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 5.4e-163 577.8 333 83.8
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 5.4e-163 577.8 333 83.2
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 9.2e-163 577.0 333 83.8
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 1.6e-162 576.2 331 84.6
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.6e-162 576.2 333 83.2
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 2.7e-162 575.5 333 82.9
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 6.0e-162 574.3 333 83.2
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.3e-161 573.2 331 84.3
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 1.3e-161 573.2 333 82.3
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.3e-161 573.2 333 82.9
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 2.3e-161 572.4 331 84.0
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 1.9e-160 569.3 333 83.2
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.9e-160 569.3 333 82.0
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.2e-159 566.6 333 80.5
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.2e-159 566.6 333 81.1
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.2e-159 566.6 331 82.5
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 3.6e-159 565.1 331 82.5
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.7e-159 564.7 331 83.1
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.8e-158 562.8 333 81.4
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 5.2e-158 561.2 331 82.2
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 1.2e-157 560.1 333 82.0
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 1.2e-157 560.1 331 81.3
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 7.6e-157 557.4 333 81.1
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 9.9e-157 557.0 331 81.3
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 2.2e-156 555.8 335 81.2
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 8.4e-156 553.9 332 79.8
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.6e-154 549.7 333 81.1
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 4.6e-154 548.1 336 81.0
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 3.0e-153 545.4 326 80.4
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 5.1e-153 544.7 334 79.3
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 6.6e-153 544.3 331 77.9
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 3.6e-151 538.5 302 84.8
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 3.8e-148 528.5 331 77.0
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 1.9e-147 526.2 323 80.5
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 2.4e-142 509.2 333 76.9
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 6.9e-142 507.7 333 74.8
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 9.9e-141 503.8 333 74.8
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 1.9e-139 499.6 332 72.6
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 2.4e-139 499.2 332 72.9
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 3.3e-136 488.8 333 70.0
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 8.1e-135 484.2 314 77.7
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 2.6e-133 479.2 332 68.7
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 5.8e-133 478.0 332 68.7
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.9e-120 436.4 333 69.1
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 7.7e-117 424.5 333 62.2
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 2.3e-113 412.9 333 58.6
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 2.0e-109 399.8 319 65.2
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 5.9e-109 398.3 225 87.6
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 3.0e-105 386.0 333 61.9
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 2.8e-103 379.4 330 56.1
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 6.8e-89 331.6 258 70.9
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 4.1e-86 322.4 247 70.0
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 1.6e-82 310.5 333 53.2
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 2.3e-81 306.6 179 84.9
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 4.4e-80 302.4 178 80.9
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 9.8e-80 301.2 336 47.9
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 1.1e-78 297.7 178 79.2
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 1.3e-76 290.8 262 63.4
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 4.7e-74 282.3 154 88.3
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.1e-62 244.6 252 56.0
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 3.6e-58 229.6 190 64.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 8.9e-57 224.9 175 68.6
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 1.9e-54 217.2 192 63.5
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 1.0e-52 211.5 163 69.9
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 1.5e-51 207.6 325 37.8
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 6.2e-50 202.2 339 35.7
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 8.1e-50 201.8 152 67.1
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.0e-49 199.5 190 57.4
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 7.6e-48 195.3 157 65.6
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 2.2e-47 193.7 402 32.1
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 2.9e-47 193.4 157 65.0
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 7.1e-46 188.7 157 64.3
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 8.6e-44 181.8 152 63.8
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 5.6e-43 179.1 147 66.7
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.0e-41 172.9 108 75.0
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.4e-38 163.7 96 79.2
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 7.1e-30 135.6 89 74.2
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.5e-29 133.3 77 79.2
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 9.6e-27 125.2 295 30.8
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 8.4e-23 112.1 63 90.5
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 6.0e-21 105.9 65 89.2
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.0e-20 105.1 134 47.0
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 2.1e-18 97.4 65 75.4
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.8e-18 96.3 54 81.5
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.5e-16 91.3 59 74.6
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.5e-15 85.9 59 71.2
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.5e-14 82.8 67 65.7
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.5e-11 74.7 63 55.6
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 5.7e-11 72.8 40 92.5
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 3.7e-10 70.1 50 68.0
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 1.8e-09 67.8 40 85.0
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 2.4e-09 67.4 42 76.2
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 9.0e-09 65.5 52 63.5
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.5e-08 64.7 41 78.0
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 2.0e-08 64.3 37 78.4
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 4.5e-08 63.2 40 82.5
BolC3t18117H Brassica oleracea HOM05D003687 ORTHO05D004571 5.0e-07 59.7 37 81.1
Solyc04g050380.3 Solanum lycopersicum HOM05D001565 ORTHO05D018129 1.9e-06 57.8 40 77.5
C03p58560 Brassica napus HOM05D003687 ORTHO05D102959 9.3e-06 55.5 29 75.9


User provided reference genes

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