Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 5.1e-303 1044.3 826 100.0
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.1e-209 734.2 816 80.6
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.5e-206 723.8 817 67.6
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 8.9e-199 698.0 831 67.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.5e-198 697.2 826 75.9
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 3.0e-194 682.9 818 67.4
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.5e-193 680.6 824 62.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.1e-188 664.5 801 72.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 4.7e-184 649.0 833 67.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 4.3e-177 625.9 826 63.2
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 6.6e-170 602.1 835 56.8
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.1e-169 601.3 829 55.1
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 4.0e-167 592.8 828 62.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 4.0e-167 592.8 828 62.4
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.4e-159 567.8 831 63.2
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 4.0e-159 566.2 865 55.6
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.4e-158 563.1 818 60.8
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.7e-157 560.8 818 55.6
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.7e-152 543.1 812 59.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 3.1e-151 540.0 834 54.3
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 2.0e-150 537.3 811 55.5
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.2e-148 529.6 825 49.9
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.2e-147 528.1 830 55.3
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.6e-147 527.7 825 53.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 7.9e-147 525.4 825 59.8
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 2.5e-145 520.4 829 53.4
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.8e-143 514.2 832 54.4
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.1e-143 513.5 815 58.7
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 3.1e-143 513.5 823 54.4
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.2e-142 511.5 827 52.0
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 5.9e-142 509.2 825 49.0
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.2e-141 507.3 835 53.2
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 5.0e-141 506.1 767 55.3
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 5.0e-141 506.1 767 55.1
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.9e-140 504.2 827 58.5
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 3.2e-140 503.4 832 54.7
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 3.2e-140 503.4 827 58.4
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.3e-138 497.3 826 50.1
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 3.3e-137 493.4 827 54.2
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.7e-136 491.1 825 54.7
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.2e-136 490.7 828 54.7
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 6.9e-135 485.7 821 50.8
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 5.9e-134 482.6 816 53.7
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 7.7e-134 482.3 818 48.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.0e-133 481.9 762 51.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.1e-132 478.4 794 47.9
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.2e-131 474.9 826 56.4
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 8.8e-130 468.8 784 50.8
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 9.1e-127 458.8 826 49.0
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.1e-124 451.8 830 51.0
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.1e-124 451.8 784 52.0
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.6e-123 448.0 533 54.2
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.8e-122 444.5 826 51.6
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 3.9e-122 443.4 817 52.1
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.9e-122 443.4 794 50.3
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 5.2e-122 443.0 830 49.4
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 4.4e-121 439.9 765 55.7
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 4.4e-121 439.9 765 55.7
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 8.2e-120 435.6 844 43.2
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.4e-119 434.1 837 47.8
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.6e-118 431.4 823 46.1
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.6e-118 431.4 880 49.3
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.0e-117 428.7 823 49.7
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.3e-117 428.3 831 45.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 5.0e-117 426.4 814 54.9
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.9e-116 424.5 786 49.9
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 3.2e-116 423.7 778 49.4
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 9.4e-116 422.2 836 48.1
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.6e-115 420.2 822 50.6
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 4.7e-115 419.9 767 52.4
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.4e-114 418.3 784 47.6
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.4e-114 418.3 819 48.7
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 3.0e-114 417.2 772 51.8
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 5.2e-114 416.4 803 52.6
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.6e-113 414.1 770 51.8
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 4.4e-113 413.3 843 46.1
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.3e-112 411.8 822 47.6
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 6.3e-112 409.5 832 51.1
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.0e-110 404.4 827 49.3
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.0e-110 404.4 829 41.6
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 7.7e-110 402.5 823 48.4
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 2.9e-109 400.6 793 46.7
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.5e-108 398.3 823 47.9
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 6.8e-106 389.4 819 50.4
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.5e-105 388.3 827 48.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.0e-105 387.9 796 44.8
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.2e-102 378.6 784 44.9
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 4.5e-102 376.7 794 42.9
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.0e-101 375.6 407 74.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.9e-96 356.7 525 53.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 4.1e-95 353.6 829 49.9
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.0e-94 351.3 836 41.9
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 4.5e-94 350.1 829 45.2
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.6e-89 334.3 774 43.7
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 4.4e-89 333.6 827 43.5
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.2e-80 304.7 828 49.2
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 9.5e-76 289.3 443 51.5
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 6.8e-74 283.1 842 39.2
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 6.4e-72 276.6 791 44.6
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 2.8e-67 261.2 224 70.1
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 4.7e-67 260.4 819 36.8
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.7e-64 251.9 772 29.5
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 2.9e-64 251.1 427 58.3
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.3e-61 242.3 797 37.4
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.3e-60 237.3 263 55.5
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 9.6e-60 236.1 216 67.6
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.3e-59 235.7 585 36.8
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.1e-59 235.0 263 54.8
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 4.8e-59 233.8 427 57.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.2e-55 221.1 190 66.3
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.6e-51 207.6 132 84.8
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 2.7e-46 191.4 155 72.3
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 3.0e-45 188.0 136 82.4
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.3e-44 184.1 801 27.1
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.5e-41 174.1 540 40.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 7.4e-36 156.8 387 52.7
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.3e-35 156.0 201 51.7
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.0e-33 148.7 182 48.4
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 7.2e-31 140.2 149 61.7
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-28 132.9 186 50.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-26 123.2 270 38.5
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 7.9e-22 110.2 95 73.7
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 2.0e-20 105.5 74 73.0
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.5e-20 105.1 131 48.9
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 3.3e-20 104.8 126 48.4
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.4e-18 98.6 78 73.1
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 4.1e-18 97.8 152 42.1
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 3.4e-17 94.7 162 41.4
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.7e-16 92.4 56 87.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.1e-14 85.5 55 80.0
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 3.3e-12 78.2 56 73.2
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.3e-12 78.2 56 73.2
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 6.3e-11 73.9 158 34.2
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.1e-10 73.2 157 38.2
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 1.8e-10 72.4 83 49.4
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 3.5e-09 68.2 47 78.7
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 2.2e-08 65.5 52 73.1
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 3.8e-08 64.7 69 53.6
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.5e-07 62.0 39 74.4
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.2e-07 61.6 101 34.7
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-06 59.3 41 68.3


User provided reference genes

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