Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 1.5e-179 633.3 450 100.0
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 5.9e-120 435.3 306 74.8
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 3.9e-116 422.5 305 76.7
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 4.4e-107 392.5 311 69.5
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 1.0e-103 381.3 457 67.8
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 2.0e-99 367.1 337 63.2
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 5.0e-95 352.4 456 64.7
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 2.7e-88 330.1 315 58.1
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 2.7e-88 330.1 315 58.1
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 5.9e-88 328.9 313 59.4
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 4.7e-85 319.3 309 58.9
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 8.0e-85 318.5 315 57.1
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 1.2e-80 304.7 312 56.1
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 5.0e-79 299.3 304 56.2
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 8.6e-79 298.5 284 59.2
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 2.8e-77 293.5 283 55.8
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 3.0e-76 290.0 289 54.7
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 6.8e-76 288.9 303 56.4
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.5e-75 287.7 292 56.5
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 2.0e-75 287.3 301 53.2
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 4.4e-75 286.2 301 54.8
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.3e-74 284.6 306 51.6
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 4.1e-73 279.6 306 51.3
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 5.4e-73 279.3 307 51.5
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 2.0e-72 277.3 307 54.1
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 2.0e-72 277.3 289 55.7
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 4.5e-72 276.2 294 52.4
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 5.9e-72 275.8 301 52.5
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 7.8e-72 275.4 294 54.1
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 7.8e-72 275.4 287 55.1
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 3.9e-71 273.1 303 52.8
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 8.6e-71 271.9 296 52.7
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.6e-69 267.7 286 52.8
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 2.8e-69 266.9 301 50.5
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 4.7e-69 266.2 295 52.5
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 2.3e-68 263.8 296 52.7
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 4.0e-68 263.1 298 51.7
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 1.2e-67 261.5 293 50.9
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 1.2e-67 261.5 300 51.7
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.5e-67 261.2 289 50.2
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 2.6e-67 260.4 294 51.4
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 4.4e-67 259.6 293 47.8
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 4.4e-67 259.6 295 48.5
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 7.5e-67 258.8 297 49.5
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 7.5e-67 258.8 313 49.2
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 1.3e-66 258.1 252 57.1
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 2.2e-66 257.3 288 50.7
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 2.2e-66 257.3 312 52.6
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 4.9e-66 256.1 298 54.0
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 1.1e-65 255.0 248 55.6
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 1.9e-65 254.2 290 49.3
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 1.9e-65 254.2 274 52.9
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 5.4e-65 252.7 287 48.4
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 5.4e-65 252.7 299 48.8
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 5.4e-65 252.7 276 49.3
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 1.2e-64 251.5 287 48.8
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 6.0e-64 249.2 237 54.9
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 7.8e-64 248.8 289 49.1
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 1.3e-63 248.1 290 48.3
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 1.3e-63 248.1 314 47.1
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 3.0e-63 246.9 295 49.5
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 7.3e-62 242.3 254 52.0
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 1.6e-61 241.1 271 48.7
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 1.6e-61 241.1 271 48.7
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 2.1e-61 240.7 324 46.9
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 2.8e-61 240.4 322 46.6
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 8.0e-61 238.8 301 48.5
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 1.1e-60 238.4 286 47.9
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 8.9e-60 235.3 327 47.4
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 1.2e-59 235.0 325 44.9
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 1.5e-59 234.6 249 53.0
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 2.0e-59 234.2 327 45.9
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 4.4e-59 233.0 276 47.5
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 7.5e-59 232.3 322 46.3
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 9.8e-59 231.9 316 46.5
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 3.7e-58 229.9 283 47.3
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 6.4e-58 229.2 311 47.3
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 5.4e-57 226.1 302 46.0
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 9.2e-57 225.3 320 46.9
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.6e-56 224.6 318 47.8
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 6.0e-56 222.6 318 47.5
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 6.6e-55 219.2 243 50.6
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 1.1e-54 218.4 324 47.2
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 5.6e-54 216.1 310 45.5
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 7.3e-54 215.7 332 45.2
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 4.7e-53 213.0 328 46.3
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 6.2e-53 212.6 250 49.6
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 8.1e-53 212.2 326 42.3
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 1.1e-52 211.8 293 44.0
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 1.8e-52 211.1 314 45.5
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 1.5e-51 208.0 302 44.0
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 4.4e-51 206.5 255 46.7
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 9.9e-51 205.3 317 41.6
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 3.7e-50 203.4 344 41.3
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 1.4e-49 201.4 249 47.0
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 2.7e-48 197.2 296 43.9
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 1.0e-47 195.3 286 42.3
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 1.5e-46 191.4 173 56.1
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 3.4e-43 180.3 344 36.3
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 4.8e-37 159.8 295 40.0
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 3.1e-36 157.1 176 50.0
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 9.0e-36 155.6 307 36.8
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 6.4e-34 149.4 290 37.9
Cpa.g.sc6.318 Carica papaya HOM05D005999 ORTHO05D003360 1.6e-32 144.8 172 51.7
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 5.1e-31 139.8 99 66.7
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.9e-30 137.9 102 64.7
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 3.6e-29 133.7 100 64.0
PSO017G5004 Papaver somniferum HOM05D005999 ORTHO05D003360 6.2e-29 132.9 245 41.6
Peaxi162Scf00439g00012 Petunia axillaris HOM05D005999 ORTHO05D003360 6.2e-21 106.3 189 40.2
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 8.4e-18 95.9 66 66.7
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 8.4e-18 95.9 66 66.7
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.1e-17 95.5 84 57.1
SalBow3G2044 Salvia bowleyana HOM05D005999 ORTHO05D003360 1.8e-15 88.2 132 40.2
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 2.3e-15 87.8 74 59.5
SalBow6G2335 Salvia bowleyana HOM05D002275 ORTHO05D003360 1.9e-14 84.7 132 38.6
SalBow6G0049 Salvia bowleyana HOM05D005999 ORTHO05D003360 5.7e-14 83.2 132 38.6
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 1.3e-13 82.0 57 63.2
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.6e-13 81.6 132 37.9
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 4.5e-11 73.6 52 59.6
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 1.1e-09 68.9 271 27.3
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 1.4e-09 68.6 48 58.3
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 4.2e-09 67.0 59 52.5
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 1.2e-08 65.5 57 54.4
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 1.8e-07 61.6 136 32.4
Pp3c20_7810 Physcomitrium patens HOM05D005999 ORTHO05D003360 2.3e-07 61.2 64 50.0
Glyma.17G206001 Glycine max HOM05D005999 ORTHO05D003360 6.7e-07 59.7 76 47.4
CANSAT54G1350 Cannabis sativa HOM05D005999 ORTHO05D003360 1.1e-06 58.9 35 65.7
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 5.7e-06 56.6 84 36.9
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 7.4e-06 56.2 70 41.4
Zm00001eb372000 Zea mays HOM05D005999 ORTHO05D003360 7.4e-06 56.2 62 50.0
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 9.7e-06 55.8 124 32.3


User provided reference genes

Program Settings