Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1421.4 697 100.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1362.1 697 95.0
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1360.9 697 95.0
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1353.2 698 94.1
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1330.5 698 91.8
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1318.9 697 91.2
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1318.1 697 91.4
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1317.4 697 90.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1316.6 697 90.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1314.7 697 90.8
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1308.1 693 91.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1298.1 697 90.0
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1295.0 697 89.8
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1231.1 698 83.8
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1226.5 698 83.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1224.9 698 83.4
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1224.5 697 83.9
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1224.2 698 84.1
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 698 83.7
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 696 81.5
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 692 82.8
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 694 83.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 698 82.2
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 694 82.6
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 698 81.7
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 698 81.5
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 692 82.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 694 82.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 698 82.5
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1186.8 675 83.6
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 698 81.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 695 81.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 695 80.4
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 694 81.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 694 81.7
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 698 80.5
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 695 80.7
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 694 80.3
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 700 81.3
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 699 80.5
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 695 80.6
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 693 79.8
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 695 80.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 698 79.2
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 695 80.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 697 80.8
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 695 79.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 697 79.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1160.6 698 79.4
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 720 78.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 694 79.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 693 80.7
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 694 78.7
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 693 80.1
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 695 78.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 694 79.8
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 695 79.4
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 693 79.8
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 695 79.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 695 79.4
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 694 78.4
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1147.1 695 79.3
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1145.2 695 79.0
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 700 78.7
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 695 79.0
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 695 79.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 694 77.2
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 698 79.2
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 695 77.6
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 694 78.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 692 79.2
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 694 76.8
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 697 78.3
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 696 77.9
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 695 76.3
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 694 76.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1124.0 694 76.2
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1120.1 696 76.6
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1118.2 696 76.6
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1110.5 693 75.6
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 747 72.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 698 77.7
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 698 77.1
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1102.8 680 78.2
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1102.0 718 75.5
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1101.7 680 78.1
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1094.3 692 76.4
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1093.6 647 80.7
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1090.5 718 74.0
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 698 74.2
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 740 73.9
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 719 72.3
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 699 75.8
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 1.9e-311 1072.0 615 83.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.9e-311 1072.0 699 74.2
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 1.8e-309 1065.4 695 75.7
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.5e-303 1045.8 698 74.2
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.1e-302 1042.0 677 73.1
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.2e-297 1026.2 585 82.6
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 3.3e-295 1018.1 705 71.3
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 3.4e-292 1008.1 702 70.5
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.3e-288 995.3 695 69.5
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 2.1e-278 962.2 641 72.5
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 2.6e-268 928.7 539 82.0
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.4e-261 905.6 581 74.2
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 4.5e-260 901.4 712 66.6
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.0e-240 837.0 699 59.5
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 2.4e-237 825.9 538 74.3
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.6e-225 786.6 699 55.9
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.1e-221 773.9 701 56.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.1e-221 773.9 701 56.2
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.9e-220 768.1 471 78.6
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.7e-220 767.7 703 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 8.8e-216 754.2 710 56.1
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.4e-213 746.9 704 53.8
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.0e-187 661.0 386 81.3
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.0e-159 567.0 720 43.9
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.2e-149 533.1 375 70.4
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.3e-137 494.6 504 54.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 5.0e-110 402.9 248 79.8
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.8e-107 394.4 765 35.0
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 7.7e-103 379.0 815 32.0
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 5.7e-98 362.8 268 66.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.6e-95 354.8 344 54.9
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 8.0e-76 289.3 247 61.5
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 3.4e-74 283.9 179 73.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.7e-73 280.4 242 60.7
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 6.2e-68 263.1 184 69.6
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.1e-67 262.3 165 75.8
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.9e-64 251.5 619 32.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 8.6e-62 242.7 235 54.0
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.4e-48 198.0 127 70.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 3.6e-44 184.1 138 71.7
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 4.9e-41 173.7 140 65.0
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 6.9e-35 153.3 93 78.5
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.5e-34 150.6 216 42.1
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 8.7e-30 136.3 76 84.2
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 3.3e-29 134.4 75 81.3
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.4e-26 124.4 84 70.2
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 8.5e-17 93.2 87 56.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 8.5e-17 93.2 85 51.8
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.1e-11 74.7 49 71.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 2.6e-10 71.6 49 65.3
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 6.7e-06 57.0 33 78.8


User provided reference genes

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