Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 2013.8 1005 100.0
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1794.2 1048 85.6
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1759.6 1049 83.9
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1704.9 1048 80.5
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1673.3 1051 79.1
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1652.5 1052 78.0
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1643.2 1048 78.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1632.1 1050 77.2
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1630.2 1057 76.5
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1627.8 1053 76.4
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1622.1 1045 76.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1593.6 1051 75.0
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1397.5 1047 66.7
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1375.1 1052 63.5
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1372.8 1049 63.6
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1371.7 1037 65.6
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1364.0 1068 64.6
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1358.2 1058 63.0
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1355.5 1046 63.9
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1354.3 1044 63.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1347.8 1019 65.2
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1340.1 1031 64.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1333.5 1053 63.2
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1333.5 1056 62.0
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1324.3 1057 62.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1316.6 1054 61.2
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1316.6 1055 62.8
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1316.2 1046 62.7
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1315.8 1052 61.6
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1315.8 1079 62.7
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1310.0 1055 61.4
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1308.5 1044 62.2
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1308.5 1057 61.4
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1301.2 1056 61.6
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1300.0 1060 61.3
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1299.6 1059 61.4
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1299.3 1020 63.4
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1298.9 1056 61.6
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1294.6 1054 61.4
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1289.2 1049 61.4
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1285.0 1063 61.0
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1284.2 1048 61.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1271.9 1051 60.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1271.1 1055 60.2
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1269.6 1051 60.0
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1267.3 1051 59.8
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1263.8 1044 60.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1261.9 1070 59.8
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1259.2 1063 60.5
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1256.9 1070 59.5
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1256.1 1051 59.1
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1249.2 1053 59.0
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1248.8 1052 59.4
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1245.3 1052 59.5
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1245.3 1052 59.3
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1244.2 1052 59.4
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1237.2 1054 58.7
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1229.5 1063 57.2
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1227.2 1089 57.1
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1223.8 1086 58.1
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1220.7 1160 54.7
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1219.5 1048 57.9
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1214.9 1066 57.3
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1205.7 1017 59.0
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1200.7 1066 56.8
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 0.0e+00 1198.7 679 87.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1198.0 1081 56.1
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1194.5 1045 56.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1192.9 1081 56.8
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1190.6 1051 56.1
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1182.2 1049 58.0
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1179.5 1050 55.7
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1178.7 1051 55.7
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1176.8 1099 54.7
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1172.9 1057 56.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1140.6 1050 55.2
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1140.2 1051 55.6
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1138.6 1050 55.1
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1129.4 1133 51.8
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1116.7 1043 55.2
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1114.4 1046 53.7
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1100.1 853 63.2
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1096.3 1014 53.2
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1090.1 1051 53.5
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1086.2 1038 53.6
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1080.5 1067 52.9
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 5.2e-310 1067.8 1059 52.7
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 5.0e-305 1051.2 1170 49.3
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 5.2e-302 1041.2 1144 49.4
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 3.3e-296 1021.9 1033 51.3
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 3.6e-295 1018.5 1049 49.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.2e-274 950.3 865 54.9
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 3.6e-271 938.7 1050 49.1
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.2e-266 923.7 1022 47.1
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 6.5e-252 874.8 882 53.2
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 7.9e-250 867.8 992 48.9
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.9e-227 793.5 1062 42.7
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.1e-214 751.1 1057 40.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 3.0e-201 706.4 732 50.3
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 7.8e-197 691.8 697 49.9
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 1.3e-196 691.0 704 50.9
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 2.6e-184 650.2 510 64.1
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.5e-181 639.8 507 61.5
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-180 637.9 719 49.0
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.6e-178 629.8 532 57.1
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-177 627.5 455 67.3
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 8.1e-170 602.1 833 40.1
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.2e-166 590.1 819 42.5
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 4.2e-166 589.7 1004 35.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 6.0e-165 585.9 850 38.2
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.2e-160 571.6 1050 36.7
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.4e-158 563.9 663 45.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 4.3e-155 553.1 340 82.9
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.1e-154 550.8 505 54.1
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.2e-151 540.8 551 52.5
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.7e-146 523.5 379 67.8
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-134 484.6 438 58.2
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 8.8e-116 422.5 347 61.1
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.1e-113 413.7 273 82.4
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.7e-103 381.7 835 32.0
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 3.8e-103 380.6 454 43.8
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 6.3e-98 363.2 353 54.7
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.8e-84 318.5 457 45.1
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.6e-77 295.4 1056 26.0
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.7e-72 278.1 383 43.6
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 4.6e-72 277.3 367 46.6
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.0e-72 276.9 259 54.8
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.4e-67 261.2 154 78.6
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 5.1e-63 247.3 177 68.9
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 1.6e-61 242.3 223 53.4
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 7.6e-59 233.4 211 57.8
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 7.6e-59 233.4 269 47.6
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.9e-57 228.8 207 54.1
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.8e-53 214.9 318 41.5
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 7.8e-48 196.8 973 24.3
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.1e-44 186.4 156 64.7
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.2e-43 183.0 1158 23.5
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 2.2e-42 178.7 211 46.9
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.2e-41 174.9 126 66.7
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.2e-40 172.9 154 61.7
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 5.1e-39 167.5 329 34.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 5.6e-38 164.1 87 90.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.4e-33 148.7 113 64.6
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 1.8e-28 132.5 71 87.3
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 4.0e-28 131.3 115 59.1
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 3.4e-27 128.3 107 60.7
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.9e-26 125.2 96 62.5
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 9.3e-25 120.2 190 38.4
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 2.3e-23 115.5 69 81.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 2.1e-21 109.0 164 34.8
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 3.4e-19 101.7 103 51.5
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 4.5e-19 101.3 73 67.1
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 6.1e-16 90.9 88 46.6
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.9e-15 88.2 89 49.4
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.6e-13 82.8 56 73.2
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 2.6e-11 75.5 75 58.7
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-10 73.2 77 50.6
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 5.1e-07 61.2 42 66.7


User provided reference genes

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