Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24813_v3 Cicer arietinum L. HOM05D001022 ORTHO05D000825 3.0e-73 278.5 149 100.0
TPR.G29851 Trifolium pratense HOM05D001022 ORTHO05D000825 6.0e-45 184.5 151 67.5
Psat2g163320 Pisum sativum HOM05D001022 ORTHO05D000825 2.1e-42 176.0 148 65.5
Medtr5g018750 Medicago truncatula HOM05D001022 ORTHO05D000825 2.8e-42 175.6 150 64.0
Lj2g0007157 Lotus japonicus HOM05D000217 ORTHO05D000121 5.4e-38 161.4 147 58.5
Glyma.01G180432 Glycine max HOM05D001022 ORTHO05D000825 8.4e-31 137.5 102 69.6
Glyma.11G061900 Glycine max HOM05D001022 ORTHO05D000825 8.4e-31 137.5 102 70.6
Phvul.002G024300 Phaseolus vulgaris HOM05D001022 ORTHO05D000825 7.1e-30 134.4 144 54.2
VMungo1215G0964 Vigna mungo HOM05D001022 ORTHO05D000825 2.7e-29 132.5 146 56.2
arahy.Tifrunner.gnm1.ann1.2Z7XPV Arachis hypogaea HOM05D001022 ORTHO05D000825 6.0e-29 131.3 157 50.3
arahy.Tifrunner.gnm1.ann1.IUP4WK Arachis hypogaea HOM05D001022 ORTHO05D000825 1.3e-28 130.2 158 50.0
Lalb_Chr09g0322791 Lupinus albus HOM05D001022 ORTHO05D000825 1.1e-25 120.6 102 61.8
Gohir.D11G194300 Gossypium hirsutum HOM05D001022 ORTHO05D000825 9.6e-19 97.4 84 53.6
Gohir.A11G187700 Gossypium hirsutum HOM05D001022 ORTHO05D000825 1.3e-18 97.1 84 53.6
Gorai.007G207600 Gossypium raimondii HOM05D001022 ORTHO05D000825 1.3e-18 97.1 84 53.6
RcHm_v2.0_Chr2g0103101 Rosa chinensis HOM05D001022 ORTHO05D000825 1.6e-18 96.7 144 38.9
MD15G1272000 Malus domestica HOM05D001022 ORTHO05D000825 2.8e-18 95.9 148 39.2
COL.COLO4_22167 Corchorus olitorius HOM05D001022 ORTHO05D000825 8.1e-18 94.4 84 52.4
Thecc.01G044700 Theobroma cacao HOM05D001022 ORTHO05D000825 4.0e-17 92.0 103 47.6
Prupe.7G146300 Prunus persica HOM05D000217 ORTHO05D000121 1.5e-16 90.1 143 38.5
FAN26G1070 Fragaria x ananassa HOM05D001022 ORTHO05D000825 3.4e-16 89.0 143 35.7
QL06p044388 Quercus lobata HOM05D001022 ORTHO05D000825 3.4e-16 89.0 143 37.8
Rhsim11G0172500 Rhododendron simsii HOM05D001022 ORTHO05D000825 5.8e-16 88.2 95 49.5
FvH4_1g14390 Fragaria vesca HOM05D001022 ORTHO05D000825 2.2e-15 86.3 143 34.3
FAN19G0195 Fragaria x ananassa HOM05D001022 ORTHO05D000825 1.1e-14 84.0 143 33.6
Nn1g05141 Nelumbo nucifera HOM05D001022 ORTHO05D000825 1.1e-14 84.0 104 43.3
Gohir.A12G067100 Gossypium hirsutum HOM05D001022 ORTHO05D000825 2.4e-14 82.8 84 46.4
Gorai.008G071000 Gossypium raimondii HOM05D001022 ORTHO05D000825 2.4e-14 82.8 84 46.4
ClCG02G012930 Citrullus lanatus HOM05D001022 ORTHO05D000825 7.1e-14 81.3 145 36.6
Cfa004241 Carpinus fangiana HOM05D001022 ORTHO05D000825 9.3e-14 80.9 95 43.2
CiPaw.01G030100 Carya illinoinensis HOM05D001022 ORTHO05D000825 1.2e-13 80.5 143 35.0
Haze_15156 Corylus avellana HOM05D001022 ORTHO05D000825 1.2e-13 80.5 95 41.1
Manes.15G147000 Manihot esculenta HOM05D001022 ORTHO05D000825 1.2e-13 80.5 85 48.2
Manes.17G098100 Manihot esculenta HOM05D001022 ORTHO05D000825 1.2e-13 80.5 85 49.4
Prupe.8G107400 Prunus persica HOM05D001022 ORTHO05D000825 1.6e-13 80.1 97 41.2
CsaV3_2G017020 Cucumis sativus L. HOM05D001022 ORTHO05D000825 2.7e-13 79.3 143 36.4
MELO3C020881.2 Cucumis melo HOM05D001022 ORTHO05D000825 4.6e-13 78.6 84 45.2
Gohir.D12G067600 Gossypium hirsutum HOM05D001022 ORTHO05D000825 4.6e-13 78.6 84 45.2
Sabra09G0084400 Salix brachista HOM05D001022 ORTHO05D000825 6.0e-13 78.2 96 45.8
Atru.chr5.2913 Acer truncatum HOM05D001022 ORTHO05D000825 7.9e-13 77.8 88 44.3
CANSAT01G2372 Cannabis sativa HOM05D001022 ORTHO05D000825 7.9e-13 77.8 147 36.7
Sabra04G0099600 Salix brachista HOM05D001022 ORTHO05D000825 7.9e-13 77.8 85 49.4
Eucgr.I01029 Eucalyptus grandis HOM05D001022 ORTHO05D000825 1.8e-12 76.6 84 39.3
Potri.009G110700 Populus trichocarpa HOM05D001022 ORTHO05D000825 1.8e-12 76.6 96 43.8
Manes.13G133100 Manihot esculenta HOM05D001022 ORTHO05D000825 3.9e-12 75.5 87 41.4
Lj3g0008290 Lotus japonicus HOM05D001022 ORTHO05D000825 5.1e-12 75.1 84 45.2
MBI16_g36201_MAGBIO Magnolia biondii HOM05D000217 ORTHO05D000121 5.1e-12 75.1 106 38.7
Aqoxy6G00967 Aquilegia oxysepala HOM05D001022 ORTHO05D000825 6.7e-12 74.7 147 31.3
COL.COLO4_17794 Corchorus olitorius HOM05D001022 ORTHO05D000825 8.7e-12 74.3 85 44.7
Dinv23566 Davidia involucrata HOM05D001022 ORTHO05D000825 8.7e-12 74.3 87 43.7
Thecc.02G030900 Theobroma cacao HOM05D001022 ORTHO05D000825 8.7e-12 74.3 144 36.8
vmacro02152 Vaccinium macrocarpon HOM05D001022 ORTHO05D000825 8.7e-12 74.3 95 42.1
SalBow6G5469 Salvia bowleyana HOM05D001022 ORTHO05D000825 1.1e-11 73.9 108 39.8
QL11p039636 Quercus lobata HOM05D001022 ORTHO05D000825 1.5e-11 73.6 84 44.0
Cfa021517 Carpinus fangiana HOM05D001022 ORTHO05D000825 1.9e-11 73.2 100 41.0
Manes.12G096900 Manihot esculenta HOM05D001022 ORTHO05D000825 1.9e-11 73.2 106 39.6
Gohir.D02G235200 Gossypium hirsutum HOM05D001022 ORTHO05D000825 2.5e-11 72.8 96 38.5
HanXRQChr04g0128501 Helianthus annuus HOM05D001022 ORTHO05D000825 4.3e-11 72.0 105 37.1
Potri.004G149800 Populus trichocarpa HOM05D001022 ORTHO05D000825 4.3e-11 72.0 97 42.3
PGR042G0153 Punica granatum HOM05D001022 ORTHO05D000825 4.3e-11 72.0 88 44.3
Cpa.g.sc62.95 Carica papaya HOM05D001022 ORTHO05D000825 5.6e-11 71.6 85 43.5
Haze_02432 Corylus avellana HOM05D001022 ORTHO05D000825 5.6e-11 71.6 100 40.0
Atru.chr3.481 Acer truncatum HOM05D001022 ORTHO05D000825 7.4e-11 71.2 98 40.8
CSS0038502 Camellia sinensis var. sinensis HOM05D001022 ORTHO05D000825 7.4e-11 71.2 95 42.1
Hma1.2p1_0584F.1_g183420 Hydrangea macrophylla HOM05D001022 ORTHO05D000825 7.4e-11 71.2 89 41.6
HanXRQChr03g0074381 Helianthus annuus HOM05D001022 ORTHO05D000825 9.6e-11 70.9 89 40.4
EL10Ac9g21775 Beta vulgaris HOM05D001022 ORTHO05D000825 1.3e-10 70.5 93 39.8
CiPaw.06G138300 Carya illinoinensis HOM05D001022 ORTHO05D000825 1.3e-10 70.5 96 42.7
Ciclev10029512m.g Citrus clementina HOM05D001022 ORTHO05D000825 1.3e-10 70.5 98 39.8
PSO675G0576 Papaver somniferum HOM05D001022 ORTHO05D000825 1.3e-10 70.5 143 33.6
Actinidia00489 Actinidia chinensis HOM05D001022 ORTHO05D000825 1.6e-10 70.1 99 42.4
Aqoxy6G00968 Aquilegia oxysepala HOM05D001022 ORTHO05D000825 1.6e-10 70.1 96 39.6
ECA240G4642 Erigeron canadensis HOM05D001022 ORTHO05D000825 2.1e-10 69.7 96 35.4
Gohir.A03G213700 Gossypium hirsutum HOM05D001022 ORTHO05D000825 2.1e-10 69.7 85 41.2
Sed0002379 Sechium edule HOM05D001022 ORTHO05D000825 2.1e-10 69.7 93 38.7
MD10G1084100 Malus domestica HOM05D001022 ORTHO05D000825 3.7e-10 68.9 85 42.4
RcHm_v2.0_Chr6g0271961 Rosa chinensis HOM05D001022 ORTHO05D000825 4.8e-10 68.6 95 40.0
CsaV3_2G014500 Cucumis sativus L. HOM05D001022 ORTHO05D000825 8.1e-10 67.8 89 38.2
Gorai.005G263300 Gossypium raimondii HOM05D001022 ORTHO05D000825 8.1e-10 67.8 96 37.5
Psat7g205840 Pisum sativum HOM05D001022 ORTHO05D000825 8.1e-10 67.8 102 36.3
FvH4_2g07760 Fragaria vesca HOM05D001022 ORTHO05D000825 1.1e-09 67.4 95 40.0
Glyma.12G046800 Glycine max HOM05D001022 ORTHO05D000825 1.4e-09 67.0 97 44.3
HanXRQChr15g0490541 Helianthus annuus HOM05D001022 ORTHO05D000825 1.4e-09 67.0 94 36.2
Eucgr.G00485 Eucalyptus grandis HOM05D001022 ORTHO05D000825 1.8e-09 66.6 98 35.7
FAN27G1037 Fragaria x ananassa HOM05D001022 ORTHO05D000825 1.8e-09 66.6 95 40.0
Nn5g29456 Nelumbo nucifera HOM05D001022 ORTHO05D000825 1.8e-09 66.6 95 40.0
Eucgr.G00484 Eucalyptus grandis HOM05D001022 ORTHO05D000825 2.4e-09 66.2 95 36.8
FAN15G2883 Fragaria x ananassa HOM05D001022 ORTHO05D000825 2.4e-09 66.2 95 40.0
CiPaw.05G059900 Carya illinoinensis HOM05D001022 ORTHO05D000825 3.1e-09 65.9 114 34.2
Eucgr.G00488 Eucalyptus grandis HOM05D001022 ORTHO05D000825 3.1e-09 65.9 104 35.6
QL11p039675 Quercus lobata HOM05D001022 ORTHO05D000825 3.1e-09 65.9 99 37.4
Eucgr.G01889 Eucalyptus grandis HOM05D001022 ORTHO05D000825 4.0e-09 65.5 98 35.7
Lsat_1_v5_gn_7_90001 Lactuca sativa HOM05D001022 ORTHO05D000825 4.0e-09 65.5 93 38.7
Lalb_Chr01g0002861 Lupinus albus HOM05D001022 ORTHO05D000825 4.0e-09 65.5 107 37.4
MBI16_g13163_MAGBIO Magnolia biondii HOM05D001022 ORTHO05D000825 4.0e-09 65.5 105 35.2
Eucgr.G00489 Eucalyptus grandis HOM05D001022 ORTHO05D000825 5.3e-09 65.1 98 36.7
Eucgr.G01546 Eucalyptus grandis HOM05D001022 ORTHO05D000825 5.3e-09 65.1 98 36.7
DCAR_001600 Daucus carota HOM05D001022 ORTHO05D000825 6.9e-09 64.7 103 35.9
Eucgr.G00481 Eucalyptus grandis HOM05D001022 ORTHO05D000825 6.9e-09 64.7 95 35.8
Eucgr.G00482 Eucalyptus grandis HOM05D001022 ORTHO05D000825 6.9e-09 64.7 95 35.8
FAN24G3202 Fragaria x ananassa HOM05D001022 ORTHO05D000825 6.9e-09 64.7 95 38.9
Hund14123 Selenicereus undatus HOM05D001022 ORTHO05D000825 6.9e-09 64.7 82 40.2
Eucgr.G00487 Eucalyptus grandis HOM05D001022 ORTHO05D000825 9.0e-09 64.3 98 35.7
Sc03g0001110 Simmondsia chinensis HOM05D001022 ORTHO05D000825 9.0e-09 64.3 94 36.2
EL10Ac6g14856 Beta vulgaris HOM05D001022 ORTHO05D000825 1.2e-08 63.9 106 36.8
DCAR_003635 Daucus carota HOM05D001022 ORTHO05D000825 1.2e-08 63.9 84 40.5
Medtr4g068850 Medicago truncatula HOM05D001022 ORTHO05D000825 1.2e-08 63.9 102 36.3
arahy.Tifrunner.gnm1.ann1.D10I8V Arachis hypogaea HOM05D001022 ORTHO05D000825 1.5e-08 63.5 97 36.1
arahy.Tifrunner.gnm1.ann1.WZE4UT Arachis hypogaea HOM05D001022 ORTHO05D000825 1.5e-08 63.5 101 35.6
Gohir.A04G129100 Gossypium hirsutum HOM05D001022 ORTHO05D000825 1.5e-08 63.5 89 37.1
Lj3g0008545 Lotus japonicus HOM05D001022 ORTHO05D000825 1.5e-08 63.5 85 42.4
Manes.12G097000 Manihot esculenta HOM05D001022 ORTHO05D000825 1.5e-08 63.5 102 36.3
AUR62016677 Chenopodium quinoa HOM05D001022 ORTHO05D000825 2.0e-08 63.2 84 41.7
Glyma.11G121900 Glycine max HOM05D001022 ORTHO05D000825 2.0e-08 63.2 87 46.0
TPR.G29889 Trifolium pratense HOM05D001022 ORTHO05D000825 2.0e-08 63.2 87 40.2
VMungo1127G0593 Vigna mungo HOM05D001022 ORTHO05D000825 2.0e-08 63.2 86 45.3
Ah.01g019720 Amaranthus hybridus HOM05D001022 ORTHO05D000825 2.6e-08 62.8 93 38.7
RcHm_v2.0_Chr6g0262091 Rosa chinensis HOM05D001022 ORTHO05D000825 2.6e-08 62.8 95 36.8
Sed0009219 Sechium edule HOM05D001022 ORTHO05D000825 2.6e-08 62.8 89 33.7
ClCG09G017880 Citrullus lanatus HOM05D001022 ORTHO05D000825 3.4e-08 62.4 89 34.8
QL11p039652 Quercus lobata HOM05D001022 ORTHO05D000825 3.4e-08 62.4 95 37.9
Sed0018521 Sechium edule HOM05D001022 ORTHO05D000825 4.5e-08 62.0 89 36.0
Phvul.011G048800 Phaseolus vulgaris HOM05D001022 ORTHO05D000825 5.8e-08 61.6 97 39.2
FAN20G0072 Fragaria x ananassa HOM05D001022 ORTHO05D000825 7.6e-08 61.2 91 38.5
AUR62011382 Chenopodium quinoa HOM05D001022 ORTHO05D000825 9.9e-08 60.8 84 40.5
Gohir.D04G174200 Gossypium hirsutum HOM05D001022 ORTHO05D000825 9.9e-08 60.8 89 36.0
Solyc01g109250.2 Solanum lycopersicum HOM05D001022 ORTHO05D000825 1.7e-07 60.1 84 35.7
Sopen01g051410 Solanum pennellii HOM05D001022 ORTHO05D000825 1.7e-07 60.1 84 35.7
PGSC0003DMG400025163 Solanum tuberosum HOM05D001022 ORTHO05D000825 1.7e-07 60.1 84 35.7
Actinidia17834 Actinidia chinensis HOM05D001022 ORTHO05D000825 2.2e-07 59.7 96 35.4
Lj9C365T10 Lonicera japonica HOM05D001022 ORTHO05D000825 2.2e-07 59.7 93 37.6
Cc02_g18040 Coffea canephora HOM05D001022 ORTHO05D000825 2.9e-07 59.3 85 40.0
THA.LOC104812024 Tarenaya hassleriana HOM05D001022 ORTHO05D000825 2.9e-07 59.3 109 32.1
Manes.13G133000 Manihot esculenta HOM05D001022 ORTHO05D000825 3.8e-07 58.9 84 35.7
SGA_v2.0_scaffold15G07193 Striga asiatica HOM05D001022 ORTHO05D000825 3.8e-07 58.9 84 38.1
Atru.chr5.2914 Acer truncatum HOM05D001022 ORTHO05D000825 6.4e-07 58.2 94 34.0
Lalb_Chr01g0002871 Lupinus albus HOM05D001022 ORTHO05D000825 8.4e-07 57.8 85 38.8
ATR0605G267 Amborella trichopoda HOM05D001022 ORTHO05D000825 1.4e-06 57.0 92 32.6
Oeu039066.1 Olea europaea HOM05D001022 ORTHO05D000825 1.9e-06 56.6 85 36.5
Oeu039067.1 Olea europaea HOM05D001022 ORTHO05D000825 1.9e-06 56.6 85 36.5
TAR625G0881 Trochodendron aralioides HOM05D001022 ORTHO05D000825 1.9e-06 56.6 51 54.9
SGA_v2.0_scaffold32G13139 Striga asiatica HOM05D001022 ORTHO05D000825 2.4e-06 56.2 87 35.6
TAR625G0663 Trochodendron aralioides HOM05D001022 ORTHO05D000825 2.4e-06 56.2 87 31.0
AUR62027248 Chenopodium quinoa HOM05D001022 ORTHO05D000825 3.2e-06 55.8 102 37.3
Gohir.A11G187900 Gossypium hirsutum HOM05D001022 ORTHO05D000825 3.2e-06 55.8 84 35.7
Gohir.D11G194400 Gossypium hirsutum HOM05D001022 ORTHO05D000825 3.2e-06 55.8 84 35.7
Gorai.007G207700 Gossypium raimondii HOM05D001022 ORTHO05D000825 3.2e-06 55.8 84 35.7
AUR62003226 Chenopodium quinoa HOM05D001022 ORTHO05D000825 4.2e-06 55.5 102 37.3
Sed0005674 Sechium edule HOM05D001022 ORTHO05D000825 4.2e-06 55.5 102 33.3
SGA_v2.0_scaffold204G41631 Striga asiatica HOM05D001022 ORTHO05D000825 4.2e-06 55.5 85 35.3
Atru.chr13.23 Acer truncatum HOM05D001022 ORTHO05D000825 5.5e-06 55.1 106 34.9
THA.LOC104809985 Tarenaya hassleriana HOM05D001022 ORTHO05D000825 5.5e-06 55.1 91 33.0
TAR628G0974 Trochodendron aralioides HOM05D001022 ORTHO05D000825 5.5e-06 55.1 87 33.3
AT3G50800 Arabidopsis thaliana HOM05D001022 ORTHO05D000825 7.1e-06 54.7 103 30.1
HanXRQChr10g0313611 Helianthus annuus HOM05D001022 ORTHO05D000825 7.1e-06 54.7 87 32.2
Potri.007G033400 Populus trichocarpa HOM05D001022 ORTHO05D000825 7.1e-06 54.7 87 33.3
Atru.chr5.2912 Acer truncatum HOM05D001022 ORTHO05D000825 9.3e-06 54.3 92 34.8
Ciclev10026684m.g Citrus clementina HOM05D001022 ORTHO05D000825 9.3e-06 54.3 87 31.0
GSVIVG01003763001 Vitis vinifera HOM05D001022 ORTHO05D000825 9.3e-06 54.3 87 32.2
GSVIVG01003765001 Vitis vinifera HOM05D001022 ORTHO05D000825 9.3e-06 54.3 87 32.2


User provided reference genes

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