Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 4.9e-258 894.0 479 100.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.8e-205 718.8 479 82.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 8.8e-183 644.0 479 77.2
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.1e-177 627.1 480 74.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.8e-175 619.8 482 73.9
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.9e-165 585.9 528 66.7
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.8e-160 569.3 475 69.3
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.4e-159 567.0 477 69.4
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 5.8e-158 561.6 482 68.5
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.4e-156 556.2 524 64.1
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 3.9e-154 548.9 477 67.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 3.7e-149 532.3 486 67.7
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.2e-139 500.7 425 64.9
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.1e-136 490.0 482 58.5
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 4.6e-131 472.2 480 56.9
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 3.9e-130 469.2 498 56.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.9e-129 466.8 473 58.6
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.3e-129 466.1 486 56.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 3.3e-129 466.1 483 56.1
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.3e-129 464.9 483 56.1
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.8e-128 463.0 472 58.5
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.3e-125 454.1 426 61.3
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.2e-124 449.5 481 56.5
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.6e-123 447.2 482 57.3
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.0e-123 445.3 435 59.1
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 5.6e-121 438.7 437 57.9
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 2.8e-120 436.4 491 55.2
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 3.7e-120 436.0 445 56.6
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 8.1e-120 434.9 473 56.4
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.4e-119 434.1 480 55.4
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 6.9e-119 431.8 494 54.5
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 6.9e-119 431.8 499 54.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.2e-118 431.0 463 54.6
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 4.5e-118 429.1 488 52.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.3e-117 427.6 479 54.7
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.9e-117 426.4 481 54.1
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.9e-116 423.7 476 54.4
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.5e-116 423.3 441 56.2
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 7.1e-116 421.8 480 54.6
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 4.6e-115 419.1 436 58.5
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 6.0e-115 418.7 486 54.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 7.9e-115 418.3 445 54.4
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.3e-114 416.8 473 54.3
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.7e-114 415.2 487 53.6
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.1e-113 414.5 509 52.7
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.5e-113 414.1 435 56.8
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 3.3e-113 412.9 494 53.0
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 3.3e-113 412.9 481 53.4
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.3e-113 412.5 494 53.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 5.7e-113 412.1 440 54.5
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 5.7e-113 412.1 479 52.8
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 9.6e-113 411.4 482 51.9
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.1e-112 410.2 487 53.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.8e-112 409.8 487 52.8
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 4.8e-112 409.1 504 51.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.1e-111 406.0 494 52.8
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.3e-111 405.6 490 52.4
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 6.9e-111 405.2 424 57.8
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 9.0e-111 404.8 496 53.4
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 5.9e-110 402.1 481 52.4
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.0e-109 401.4 457 53.6
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 8.4e-109 398.3 493 51.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 3.5e-107 392.9 495 52.3
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.3e-106 391.0 427 54.1
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.3e-106 391.0 474 51.5
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.8e-106 390.6 464 53.2
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 2.3e-106 390.2 489 52.4
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 3.0e-106 389.8 491 50.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.9e-106 389.4 496 50.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.9e-106 389.4 474 51.3
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 5.1e-106 389.0 482 51.7
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.5e-105 386.7 484 51.9
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 9.7e-105 384.8 421 54.9
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.3e-104 384.4 477 51.4
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 2.8e-104 383.3 498 50.4
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 4.1e-103 379.4 457 53.4
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 5.3e-103 379.0 543 46.0
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 9.0e-103 378.3 486 50.6
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 3.6e-99 366.3 495 48.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 7.9e-99 365.2 479 50.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.4e-98 364.4 430 53.7
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.3e-98 363.6 481 50.5
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.9e-98 362.8 360 59.4
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.5e-97 360.9 494 48.0
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.0e-97 360.5 381 55.9
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 9.7e-97 358.2 431 51.3
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 9.7e-97 358.2 462 51.7
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.1e-95 353.2 512 47.3
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 3.4e-94 349.7 492 48.0
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 5.9e-94 349.0 499 46.9
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.4e-92 344.4 475 46.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 5.5e-92 342.4 330 59.7
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 8.8e-90 335.1 523 45.9
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-89 334.7 476 47.5
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.4e-89 332.8 447 48.3
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.2e-88 330.5 520 43.1
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.8e-88 330.1 485 46.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 6.3e-88 328.9 474 47.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.4e-87 327.8 468 48.3
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 9.1e-87 325.1 531 42.0
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.0e-86 323.9 435 50.3
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 2.9e-85 320.1 512 45.1
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.5e-84 317.8 474 44.9
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.5e-84 317.8 514 43.0
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 2.5e-84 317.0 475 46.1
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.7e-83 312.8 523 42.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.3e-82 310.5 427 48.0
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 6.7e-82 308.9 483 45.8
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.5e-81 307.8 432 46.3
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 4.4e-81 306.2 476 45.8
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.2e-78 298.1 454 46.5
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.2e-77 293.9 563 40.0
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 3.8e-77 293.1 435 44.1
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 1.9e-76 290.8 249 65.5
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 7.2e-76 288.9 283 59.7
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 2.0e-73 280.8 445 43.1
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-72 278.1 472 42.8
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.1e-71 275.0 426 43.9
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.7e-70 270.4 393 43.8
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.2e-69 267.3 431 43.4
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.9e-69 266.9 495 41.8
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 3.8e-69 266.5 259 59.1
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.0e-66 258.5 435 41.1
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 2.0e-62 244.2 417 42.4
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 5.9e-62 242.7 284 51.1
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.9e-60 237.7 419 41.3
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 7.3e-52 209.1 435 36.8
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.1e-50 203.8 462 35.7
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 5.6e-44 183.0 299 44.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.4e-42 178.3 265 43.8
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 2.1e-38 164.5 257 46.7
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 4.7e-35 153.3 443 28.0
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.3e-32 145.2 469 29.6
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 1.2e-30 138.7 172 49.4
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 7.8e-30 136.0 76 82.9
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.9e-29 133.7 304 32.2
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.4e-26 125.2 113 57.5
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 5.8e-25 119.8 78 83.3
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.4e-23 114.4 107 64.5
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.4e-23 114.4 190 44.2
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.0e-21 107.5 67 73.1
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 3.3e-20 104.0 184 41.8
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.3e-19 102.1 401 26.4
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.6e-19 100.5 100 53.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 4.8e-19 100.1 178 38.8
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.8e-17 93.2 169 41.4
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 9.9e-17 92.4 176 36.9
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.3e-16 92.0 127 43.3
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.7e-16 91.7 314 29.9
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 6.4e-16 89.7 191 39.8
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.2e-14 85.5 191 37.2
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.9e-13 80.5 127 40.9
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 5.8e-09 66.6 104 40.4
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.2e-08 64.7 70 45.7
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 7.1e-07 59.7 155 36.1
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 7.1e-07 59.7 75 50.7
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 7.9e-06 56.2 117 42.7


User provided reference genes

Program Settings