Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24722_v3 Cicer arietinum L. HOM05D006669 ORTHO05D008440 5.8e-62 240.7 124 100.0
Medtr5g016110 Medicago truncatula HOM05D006669 ORTHO05D008440 2.1e-35 152.5 110 75.5
Lalb_Chr09g0323441 Lupinus albus HOM05D006669 ORTHO05D008440 6.3e-32 141.0 116 65.5
VMungo1215G2631 Vigna mungo HOM05D006669 ORTHO05D008440 1.8e-31 139.4 117 66.7
Glyma.01G191500 Glycine max HOM05D006669 ORTHO05D008440 4.1e-31 138.3 112 67.9
Glyma.11G050600 Glycine max HOM05D006669 ORTHO05D008440 5.3e-31 137.9 120 65.0
arahy.Tifrunner.gnm1.ann1.37Y375 Arachis hypogaea HOM05D006669 ORTHO05D008440 7.0e-31 137.5 116 63.8
Phvul.002G013400 Phaseolus vulgaris HOM05D006669 ORTHO05D008440 1.6e-30 136.3 117 65.8
arahy.Tifrunner.gnm1.ann1.QDP4K1 Arachis hypogaea HOM05D006669 ORTHO05D008440 2.0e-30 136.0 116 62.9
Lj2g0024438 Lotus japonicus HOM05D006669 ORTHO05D008440 1.0e-29 133.7 104 66.3
Psat0s1712g0160 Pisum sativum HOM05D006669 ORTHO05D008440 1.0e-29 133.7 89 79.8
TPR.G20965 Trifolium pratense HOM05D006669 ORTHO05D008440 2.8e-24 115.5 118 61.0
Haze_15317 Corylus avellana HOM05D006669 ORTHO05D008440 1.3e-21 106.7 70 75.7
TWI53G1681 Tripterygium wilfordii HOM05D006669 ORTHO05D008440 5.5e-20 101.3 68 70.6
Atru.chr3.203 Acer truncatum HOM05D006669 ORTHO05D008440 7.2e-20 100.9 68 76.5
Cpa.g.sc6.52 Carica papaya HOM05D006669 ORTHO05D008440 9.4e-20 100.5 74 68.9
CANSAT01G1540 Cannabis sativa HOM05D006669 ORTHO05D008440 1.2e-19 100.1 109 57.8
Ciclev10027520m.g Citrus clementina HOM05D006669 ORTHO05D008440 1.2e-19 100.1 69 66.7
ClCG01G017320 Citrullus lanatus HOM05D006669 ORTHO05D008440 1.6e-19 99.8 110 54.5
QL06p039922 Quercus lobata HOM05D006669 ORTHO05D008440 1.6e-19 99.8 74 67.6
MD15G1293100 Malus domestica HOM05D006669 ORTHO05D008440 3.6e-19 98.6 68 72.1
Prupe.6G224500 Prunus persica HOM05D006669 ORTHO05D008440 4.7e-19 98.2 99 56.6
TAR381G0156 Trochodendron aralioides HOM05D006669 ORTHO05D008440 4.7e-19 98.2 74 70.3
GSVIVG01000155001 Vitis vinifera HOM05D006669 ORTHO05D008440 6.1e-19 97.8 100 57.0
CsaV3_6G043850 Cucumis sativus L. HOM05D006669 ORTHO05D008440 8.0e-19 97.4 116 52.6
MELO3C007610.2 Cucumis melo HOM05D006669 ORTHO05D008440 1.8e-18 96.3 110 53.6
Aa31LG6G14350 Aethionema arabicum HOM05D006669 ORTHO05D008440 2.3e-18 95.9 106 50.0
CiPaw.02G004600 Carya illinoinensis HOM05D006669 ORTHO05D008440 4.0e-18 95.1 72 66.7
RcHm_v2.0_Chr2g0107341 Rosa chinensis HOM05D006669 ORTHO05D008440 6.8e-18 94.4 84 59.5
FvH4_1g17190 Fragaria vesca HOM05D006669 ORTHO05D008440 1.2e-17 93.6 84 61.9
FAN19G2999 Fragaria x ananassa HOM05D006669 ORTHO05D008440 1.2e-17 93.6 84 61.9
FAN26G1063 Fragaria x ananassa HOM05D006669 ORTHO05D008440 1.2e-17 93.6 67 70.1
FAN28G0180 Fragaria x ananassa HOM05D006669 ORTHO05D008440 1.2e-17 93.6 84 61.9
THA.LOC104807621 Tarenaya hassleriana HOM05D006669 ORTHO05D008440 1.5e-17 93.2 73 63.0
AT4G37480 Arabidopsis thaliana HOM05D006669 ORTHO05D008440 2.0e-17 92.8 73 63.0
Duzib147G0464 Durio zibethinus HOM05D006669 ORTHO05D008440 2.0e-17 92.8 66 72.7
Manes.12G112200 Manihot esculenta HOM05D006669 ORTHO05D008440 2.0e-17 92.8 74 63.5
Gohir.A02G153400 Gossypium hirsutum HOM05D006669 ORTHO05D008440 3.4e-17 92.0 66 72.7
Actinidia16443 Actinidia chinensis HOM05D006669 ORTHO05D008440 4.4e-17 91.7 73 67.1
Gohir.D03G027000 Gossypium hirsutum HOM05D006669 ORTHO05D008440 4.4e-17 91.7 66 71.2
Gorai.003G028700 Gossypium raimondii HOM05D006669 ORTHO05D008440 4.4e-17 91.7 66 71.2
Thhalv10024891m.g Eutrema salsugineum HOM05D006669 ORTHO05D008440 5.7e-17 91.3 73 63.0
Thecc.01G068300 Theobroma cacao HOM05D006669 ORTHO05D008440 5.7e-17 91.3 66 71.2
Hma1.2p1_1506F.1_g287530 Hydrangea macrophylla HOM05D006669 ORTHO05D008440 7.5e-17 90.9 75 64.0
Hma1.2p1_1506F.1_g287540 Hydrangea macrophylla HOM05D006669 ORTHO05D008440 7.5e-17 90.9 75 64.0
Actinidia21236 Actinidia chinensis HOM05D006669 ORTHO05D008440 9.8e-17 90.5 73 65.8
BcaB03g12341 Brassica carinata HOM05D006669 ORTHO05D008440 1.3e-16 90.1 73 61.6
Sp7g35160 Schrenkiella parvula HOM05D006669 ORTHO05D008440 1.7e-16 89.7 67 62.7
BcaC01g00401 Brassica carinata HOM05D006669 ORTHO05D008440 2.8e-16 89.0 73 60.3
C03p79320 Brassica napus HOM05D006669 ORTHO05D008440 2.8e-16 89.0 73 60.3
BolC3t20175H Brassica oleracea HOM05D006669 ORTHO05D008440 2.8e-16 89.0 73 60.3
CARHR245880 Cardamine hirsuta HOM05D006669 ORTHO05D008440 2.8e-16 89.0 114 50.0
vmacro17989 Vaccinium macrocarpon HOM05D006669 ORTHO05D008440 3.7e-16 88.6 117 50.4
COL.COLO4_11531 Corchorus olitorius HOM05D006669 ORTHO05D008440 4.8e-16 88.2 59 71.2
Lj4C159G4 Lonicera japonica HOM05D006669 ORTHO05D008440 4.8e-16 88.2 116 45.7
Nn1g04622 Nelumbo nucifera HOM05D006669 ORTHO05D008440 4.8e-16 88.2 73 64.4
A08p22660 Brassica napus HOM05D006669 ORTHO05D008440 6.3e-16 87.8 67 61.2
BraA08t34233Z Brassica rapa HOM05D006669 ORTHO05D008440 6.3e-16 87.8 67 61.2
Sopen02g014840 Solanum pennellii HOM05D006669 ORTHO05D008440 8.3e-16 87.4 81 56.8
AL7G13310 Arabidopsis lyrata HOM05D006669 ORTHO05D008440 1.1e-15 87.0 67 62.7
Carub.0007s0280 Capsella rubella HOM05D006669 ORTHO05D008440 1.8e-15 86.3 64 65.6
CAN.G1290.5 Capsicum annuum HOM05D006669 ORTHO05D008440 1.8e-15 86.3 75 57.3
Cc07_g06760 Coffea canephora HOM05D006669 ORTHO05D008440 1.8e-15 86.3 118 45.8
Solyc02g064740.3 Solanum lycopersicum HOM05D006669 ORTHO05D008440 4.1e-15 85.1 81 55.6
Eucgr.I00723 Eucalyptus grandis HOM05D006669 ORTHO05D008440 5.4e-15 84.7 59 71.2
Sc16g0000050 Simmondsia chinensis HOM05D006669 ORTHO05D008440 7.0e-15 84.3 64 64.1
Rhsim08G0095700 Rhododendron simsii HOM05D006669 ORTHO05D008440 9.1e-15 84.0 117 48.7
CSS0012464 Camellia sinensis var. sinensis HOM05D006669 ORTHO05D008440 1.2e-14 83.6 114 44.7
CSS0011361 Camellia sinensis var. sinensis HOM05D006669 ORTHO05D008440 3.5e-14 82.0 60 71.7
Nitab4.5_0004400g0020 Nicotiana tabacum HOM05D006669 ORTHO05D008440 3.5e-14 82.0 96 51.0
Peaxi162Scf01526g00017 Petunia axillaris HOM05D006669 ORTHO05D008440 4.5e-14 81.6 94 52.1
PGR004G0108 Punica granatum HOM05D006669 ORTHO05D008440 5.9e-14 81.3 94 53.2
SalBow6G5653 Salvia bowleyana HOM05D006669 ORTHO05D008440 5.9e-14 81.3 70 64.3
Potri.007G052400 Populus trichocarpa HOM05D006669 ORTHO05D008440 7.7e-14 80.9 67 64.2
Ah.03g146430 Amaranthus hybridus HOM05D006669 ORTHO05D008440 2.2e-13 79.3 72 65.3
Nitab4.5_0001772g0050 Nicotiana tabacum HOM05D006669 ORTHO05D008440 2.9e-13 79.0 93 51.6
MSTRG.2837 Avicennia marina HOM05D006669 ORTHO05D008440 3.8e-13 78.6 54 74.1
EL10Ac6g15658 Beta vulgaris HOM05D006669 ORTHO05D008440 3.8e-13 78.6 86 55.8
Migut.H00372 Erythranthe guttata HOM05D006669 ORTHO05D008440 3.8e-13 78.6 54 70.4
Oeu040598.1 Olea europaea HOM05D006669 ORTHO05D008440 5.0e-13 78.2 74 56.8
DCAR_025954 Daucus carota HOM05D006669 ORTHO05D008440 6.5e-13 77.8 90 54.4
Sabra07G0046000 Salix brachista HOM05D006669 ORTHO05D008440 8.5e-13 77.4 73 60.3
Lsat_1_v5_gn_3_88261 Lactuca sativa HOM05D006669 ORTHO05D008440 1.2e-11 73.6 53 67.9
HPP92_000757 Vanilla planifolia HOM05D006669 ORTHO05D008440 3.6e-11 72.0 57 59.6
Zm00001eb214300 Zea mays HOM05D006669 ORTHO05D008440 8.0e-11 70.9 67 56.7
unitig_62.g23421 Utricularia gibba HOM05D006669 ORTHO05D008440 1.0e-10 70.5 53 64.2
AUR62003969 Chenopodium quinoa HOM05D006669 ORTHO05D008440 1.8e-10 69.7 71 54.9
ECA246G2447 Erigeron canadensis HOM05D006669 ORTHO05D008440 1.8e-10 69.7 66 57.6
HanXRQChr12g0376911 Helianthus annuus HOM05D006669 ORTHO05D008440 4.0e-10 68.6 54 66.7
ATR0030G057 Amborella trichopoda HOM05D006669 ORTHO05D008440 8.8e-10 67.4 58 58.6
Os03g0761700 Oryza sativa ssp. japonica HOM05D006669 ORTHO05D008440 2.6e-09 65.9 54 63.0
SEGI_13248 Sequoiadendron giganteum HOM05D006669 ORTHO05D008440 1.3e-08 63.5 54 61.1
SEGI_27298 Sequoiadendron giganteum HOM05D006669 ORTHO05D008440 1.7e-08 63.2 53 62.3
Pp3c5_10140 Physcomitrium patens HOM05D006669 ORTHO05D008440 2.4e-07 59.3 54 46.3
MSTRG.9802 Avicennia marina HOM05D001981 ORTHO05D000470 3.1e-07 58.9 68 39.7
CSS0022287 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 1.2e-06 57.0 57 43.9
CSS0033730 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 2.0e-06 56.2 53 45.3
TPR.G11800 Trifolium pratense HOM05D001981 ORTHO05D000470 2.0e-06 56.2 107 31.8
Migut.G00756 Erythranthe guttata HOM05D001981 ORTHO05D000470 2.7e-06 55.8 88 35.2
COL.COLO4_28328 Corchorus olitorius HOM05D001981 ORTHO05D000470 3.5e-06 55.5 56 42.9
Dinv27206 Davidia involucrata HOM05D001981 ORTHO05D000470 4.5e-06 55.1 53 45.3
PGSC0003DMG400015755 Solanum tuberosum HOM05D001981 ORTHO05D000470 4.5e-06 55.1 89 37.1
TAR365G0430 Trochodendron aralioides HOM05D001981 ORTHO05D000470 4.5e-06 55.1 61 42.6
HanXRQChr14g0435821 Helianthus annuus HOM05D001981 ORTHO05D000470 5.9e-06 54.7 93 34.4
PGR083G2750 Punica granatum HOM05D001981 ORTHO05D000470 5.9e-06 54.7 53 45.3
vmacro04356 Vaccinium macrocarpon HOM05D001140 ORTHO05D000470 5.9e-06 54.7 86 34.9
Hma1.2p1_0226F.1_g095270 Hydrangea macrophylla HOM05D001981 ORTHO05D000470 7.7e-06 54.3 71 36.6


User provided reference genes

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