Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 2392.5 1248 100.0
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 2004.9 1261 82.8
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1927.1 1246 80.8
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1769.6 1282 74.3
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1768.8 1247 74.2
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1762.3 1246 74.1
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1707.6 1246 71.7
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1704.1 1253 72.4
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1668.3 1259 70.0
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1662.1 1246 70.1
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1604.7 1243 68.9
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1410.2 1265 59.7
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1400.6 1264 60.8
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1383.6 1268 58.2
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1337.8 1250 57.0
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1335.9 1268 56.4
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1333.9 1252 57.1
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1332.8 1258 57.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1327.0 1252 57.1
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1323.5 1259 57.2
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1297.0 1259 55.4
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1295.0 1268 55.0
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1288.5 1259 56.3
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1288.1 1259 54.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1280.8 1257 55.1
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1271.9 1262 55.4
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1267.7 1247 55.0
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1264.2 1247 55.1
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1261.9 1265 53.8
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1259.6 1271 53.7
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1255.7 1252 55.8
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1255.7 1247 55.1
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1249.6 1275 53.4
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1249.2 1270 53.6
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1239.9 1263 55.3
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1239.9 1245 55.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1234.2 1181 57.0
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1231.5 1256 53.9
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1221.1 1268 52.2
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1216.4 1260 54.0
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1211.8 1263 52.2
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1198.3 1252 51.6
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1177.5 1269 51.4
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1163.3 1252 50.9
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 1264 50.6
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1146.7 1266 50.9
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1145.6 1249 49.6
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1142.9 1252 50.2
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1139.0 1107 56.2
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1138.6 1256 50.1
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1133.2 1261 50.0
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1130.2 1259 49.2
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1129.4 1280 49.5
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1119.0 1255 48.6
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1117.1 1255 49.4
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1111.7 1262 49.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1110.1 1261 49.2
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1109.0 1108 55.9
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1106.7 1264 48.8
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1106.3 1258 48.3
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1106.3 1256 49.3
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1105.1 1248 51.0
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1103.6 1242 48.8
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1101.3 1248 49.4
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1099.7 1242 48.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1099.3 1241 51.1
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1097.0 1177 53.4
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1092.0 1272 48.5
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1090.1 1270 49.3
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 7.7e-311 1070.8 937 61.2
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 1.1e-309 1067.0 1279 48.1
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.4e-309 1066.6 1278 48.0
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 2.7e-308 1062.4 1261 47.9
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 7.9e-308 1060.8 1261 48.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 6.7e-307 1057.7 1243 47.6
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 6.7e-307 1057.7 1261 48.1
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 6.7e-307 1057.7 1237 48.7
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 3.1e-304 1048.9 1239 48.0
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 9.0e-304 1047.3 1310 46.4
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 5.9e-303 1044.6 1265 49.5
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 1.7e-302 1043.1 1267 47.4
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.6e-300 1036.6 1265 46.7
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 3.6e-300 1035.4 951 58.4
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 7.9e-300 1034.2 1263 48.0
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.4e-296 1023.5 1014 54.2
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 2.4e-296 1022.7 1240 47.0
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 8.2e-289 997.7 880 60.3
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 9.1e-288 994.2 1280 45.6
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 8.5e-286 987.6 1251 45.7
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.8e-283 979.9 1193 46.2
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.5e-277 960.3 1053 49.6
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 8.0e-244 848.2 855 55.6
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.1e-235 821.2 981 46.3
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.5e-221 774.2 968 46.0
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 3.3e-221 773.1 1248 40.0
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 5.6e-213 745.7 1009 45.9
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 9.9e-210 734.9 1287 36.8
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 3.7e-204 716.5 908 44.1
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 7.1e-200 702.2 1128 38.0
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 7.4e-173 612.5 768 43.4
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.8e-171 607.8 798 42.0
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.4e-171 607.4 1018 37.5
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.0e-170 604.4 878 40.2
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.2e-162 578.6 571 53.8
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 3.0e-158 563.9 813 40.8
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 1.2e-141 508.8 396 68.7
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.1e-136 492.3 427 63.0
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.1e-134 484.2 637 41.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.4e-117 427.6 629 41.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.6e-106 392.1 237 81.9
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.8e-106 389.8 456 47.6
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.0e-105 387.9 362 60.2
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 7.6e-93 346.7 349 59.0
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 6.4e-92 343.6 338 60.1
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.1e-90 338.6 338 59.8
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 7.9e-82 310.1 440 37.5
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.3e-72 278.1 666 31.4
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.3e-68 266.2 383 41.0
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.1e-66 258.8 167 76.0
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.3e-65 255.4 427 34.4
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-57 229.2 350 34.9
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.3e-55 223.0 375 39.2
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.7e-45 187.2 294 36.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.2e-43 181.4 310 37.1
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 8.3e-39 167.2 154 59.7
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 4.5e-37 161.4 119 67.2
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 3.2e-35 155.2 119 67.2
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.8e-33 149.4 119 65.5
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.3e-23 116.7 314 32.2
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 6.6e-20 104.4 203 35.5
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.2e-16 93.6 128 37.5
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 4.1e-14 85.1 419 26.5
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 6.6e-12 77.8 61 65.6


User provided reference genes

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