Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.3e-93 347.1 275 100.0
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.8e-79 300.1 276 90.2
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.3e-79 299.7 276 90.2
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.1e-73 280.8 275 88.4
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 3.3e-73 279.3 275 85.1
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.6e-72 276.9 275 87.3
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 6.8e-71 271.6 275 82.2
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 3.8e-69 265.8 275 86.2
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 2.4e-68 263.1 276 83.3
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 3.5e-67 259.2 263 84.0
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 3.5e-67 259.2 263 84.0
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 8.7e-66 254.6 265 83.8
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 4.3e-65 252.3 266 83.1
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 9.6e-65 251.1 267 83.5
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 2.8e-64 249.6 257 85.6
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 4.8e-64 248.8 266 82.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.8e-63 246.9 250 87.2
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.8e-63 246.9 250 87.2
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.0e-63 245.7 261 83.9
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.3e-63 245.4 250 86.4
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 9.0e-63 244.6 262 82.8
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.2e-62 244.2 273 79.9
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.4e-62 242.7 265 81.9
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.3e-61 240.7 266 82.3
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 6.4e-61 238.4 271 80.4
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 8.4e-61 238.0 269 80.3
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.4e-60 237.3 269 80.3
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.4e-60 237.3 264 81.8
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.4e-60 237.3 264 81.8
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.9e-60 236.9 266 72.9
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.9e-60 236.9 266 81.2
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.2e-60 236.1 259 83.0
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 3.2e-60 236.1 266 80.5
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 4.2e-60 235.7 264 81.1
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.6e-59 233.8 263 81.4
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.1e-59 233.4 267 79.8
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.1e-59 233.4 269 79.9
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.0e-59 231.9 267 79.4
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 7.9e-59 231.5 264 80.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.7e-58 230.3 266 77.4
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.3e-58 229.9 250 82.8
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.3e-58 229.9 250 82.8
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 2.3e-58 229.9 266 79.7
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 3.0e-58 229.6 250 82.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 5.1e-58 228.8 275 77.1
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.1e-58 228.8 266 79.3
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 5.1e-58 228.8 266 79.3
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 5.1e-58 228.8 266 80.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 8.7e-58 228.0 261 80.1
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 8.7e-58 228.0 271 78.2
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-57 227.6 268 79.5
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.5e-57 227.3 266 80.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.9e-57 226.9 267 80.9
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 5.6e-57 225.3 267 78.7
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 9.6e-57 224.6 248 83.1
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.3e-56 224.2 275 77.5
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.1e-56 223.4 274 78.5
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.1e-56 223.4 274 78.5
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.8e-56 223.0 269 77.3
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.2e-56 221.9 267 78.7
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 8.1e-56 221.5 250 82.0
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.1e-55 221.1 262 79.4
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.4e-55 220.7 259 78.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.4e-55 220.7 267 77.9
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 5.3e-55 218.8 267 76.4
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 6.9e-55 218.4 269 75.8
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.4e-54 216.1 267 76.4
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 7.6e-54 214.9 267 77.9
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.6e-54 214.9 269 75.5
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.6e-54 214.9 269 75.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 7.6e-54 214.9 273 76.6
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 9.9e-54 214.5 243 84.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 9.9e-54 214.5 267 76.4
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.3e-53 214.2 272 76.1
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 2.9e-53 213.0 262 78.6
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 4.9e-53 212.2 272 76.1
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 8.4e-53 211.5 266 74.4
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.1e-52 211.1 251 81.3
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.4e-52 210.7 269 74.7
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.9e-52 210.3 251 80.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 4.2e-52 209.1 271 70.8
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 7.1e-52 208.4 269 75.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 9.3e-52 208.0 270 75.2
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.2e-51 207.6 269 77.3
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.2e-51 207.6 260 78.5
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.6e-51 207.2 269 74.3
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.6e-51 207.2 264 76.9
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.1e-51 206.8 270 74.8
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.1e-51 206.8 250 79.2
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-51 206.8 267 76.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.5e-51 206.1 269 75.5
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 3.5e-51 206.1 268 75.4
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 6.0e-51 205.3 270 75.2
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 7.9e-51 204.9 263 76.0
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.0e-50 204.5 264 76.5
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.0e-50 204.5 264 76.1
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.0e-50 204.5 257 78.2
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.0e-50 204.5 268 76.9
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.0e-50 204.5 267 74.9
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 1.8e-50 203.8 270 74.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-50 203.4 267 75.3
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.3e-50 203.4 267 75.3
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 3.9e-50 202.6 272 75.0
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-49 200.3 267 74.5
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.5e-49 199.9 280 48.6
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 3.3e-49 199.5 274 73.4
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.3e-49 199.1 251 78.1
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 4.3e-49 199.1 269 75.1
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 4.3e-49 199.1 264 74.6
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-48 197.2 267 73.8
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.8e-48 196.4 275 73.8
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.8e-48 196.4 267 74.9
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 6.2e-48 195.3 270 74.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 6.2e-48 195.3 270 73.7
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 6.2e-48 195.3 270 73.7
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.2e-48 195.3 277 42.2
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 8.1e-48 194.9 267 74.5
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 8.1e-48 194.9 275 73.5
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 8.1e-48 194.9 275 73.5
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.4e-47 194.1 230 84.3
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.8e-47 193.7 253 77.5
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 3.1e-47 193.0 240 81.2
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 9.0e-47 191.4 258 75.6
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.5e-46 190.7 262 70.2
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.3e-45 187.6 252 76.6
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 2.2e-45 186.8 273 70.3
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.1e-44 184.5 274 71.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.4e-44 184.1 264 73.1
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 7.1e-44 181.8 273 62.6
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.2e-43 181.0 260 71.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.6e-43 180.6 269 73.2
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 6.0e-43 178.7 229 81.7
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.3e-42 177.6 212 86.8
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.3e-42 177.6 261 71.6
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.3e-42 176.8 243 78.6
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 2.3e-42 176.8 274 69.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 8.7e-42 174.9 228 81.1
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.8e-40 169.9 259 69.5
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.7e-40 169.5 233 78.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.4e-36 157.5 86 87.2
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 4.2e-36 156.0 267 55.4
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 2.7e-35 153.3 211 81.0
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-34 149.8 237 73.8
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.9e-30 135.6 87 75.9
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 5.0e-29 132.5 214 76.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.4e-28 131.0 193 84.5
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.7e-27 126.7 271 63.1
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 6.1e-27 125.6 93 66.7
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 6.1e-27 125.6 271 62.7
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 6.1e-27 125.6 263 53.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.3e-25 119.4 95 58.9
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.9e-21 106.7 276 55.8
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 5.0e-21 105.9 92 64.1
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 6.5e-21 105.5 86 60.5
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 9.7e-17 91.7 83 56.6
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 5.3e-15 85.9 55 78.2
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 6.3e-08 62.4 255 54.9


User provided reference genes

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