Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.8e-262 908.7 439 100.0
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.9e-246 854.4 439 91.8
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.0e-245 852.0 436 92.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-240 836.3 439 90.9
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.1e-240 836.3 434 91.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.2e-240 834.7 439 89.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 2.1e-239 832.0 434 90.6
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.7e-239 831.6 433 90.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.0e-238 829.7 439 89.7
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-237 825.1 433 90.5
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-237 825.1 433 90.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.7e-236 821.2 439 87.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 7.0e-235 817.0 438 86.8
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 9.1e-235 816.6 439 87.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 4.2e-232 807.7 439 86.3
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.2e-231 806.2 435 86.7
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 4.7e-231 804.3 439 86.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-229 799.7 435 86.0
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 4.4e-229 797.7 439 85.6
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 9.8e-229 796.6 450 83.6
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.8e-229 796.6 439 85.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.1e-227 793.1 438 84.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 9.1e-227 790.0 439 85.0
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.2e-226 789.6 439 85.6
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.5e-226 788.1 439 85.4
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.0e-225 786.6 439 83.8
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.7e-225 785.8 439 85.2
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.7e-225 785.8 431 84.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.7e-225 785.8 431 84.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 3.8e-225 784.6 436 83.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 8.6e-225 783.5 439 85.2
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.5e-224 782.7 431 84.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.3e-224 781.6 439 84.1
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 3.3e-224 781.6 439 83.4
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.2e-224 781.2 431 83.8
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 5.5e-224 780.8 431 85.4
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.2e-224 780.4 439 83.4
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.8e-223 778.5 439 82.9
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.7e-223 777.7 439 83.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.7e-223 777.7 436 83.0
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.4e-222 776.2 431 84.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 7.5e-221 770.4 438 83.1
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 9.8e-221 770.0 439 82.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.2e-220 768.8 429 84.1
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.8e-220 768.5 439 81.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.8e-220 768.5 439 82.2
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 6.3e-220 767.3 439 80.9
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.1e-219 765.0 436 81.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 9.2e-219 763.5 431 82.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.9e-218 760.8 430 82.8
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 5.9e-218 760.8 431 83.1
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 6.6e-217 757.3 436 80.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.5e-216 756.1 435 80.9
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.5e-216 756.1 439 82.0
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.5e-216 756.1 430 81.2
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.5e-216 755.4 436 81.0
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.3e-216 754.6 437 80.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 9.5e-216 753.4 431 80.7
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-215 753.1 434 80.4
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.2e-215 753.1 434 80.4
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.2e-215 753.1 495 72.7
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.6e-215 752.7 436 80.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.1e-215 752.3 431 80.7
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.8e-215 751.9 469 76.8
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 4.7e-215 751.1 436 79.8
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 8.0e-215 750.4 434 80.0
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 8.0e-215 750.4 437 79.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.0e-215 750.4 448 79.5
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.0e-214 750.0 428 82.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.8e-214 749.2 431 81.0
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.3e-214 748.8 434 79.7
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 4.0e-214 748.0 437 79.9
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 6.8e-214 747.3 430 80.9
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 8.9e-214 746.9 430 80.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-213 746.5 439 79.5
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 9.8e-213 743.4 429 79.3
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.2e-212 742.3 439 78.8
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.7e-212 741.5 431 80.5
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 5.4e-211 737.6 433 78.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 7.0e-211 737.3 445 78.2
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.2e-210 736.5 419 84.2
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.6e-210 736.1 440 77.5
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.1e-207 725.7 507 70.6
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.1e-206 723.4 431 77.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.4e-205 718.4 411 82.7
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 9.8e-205 716.8 420 80.7
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.9e-204 715.3 522 68.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.5e-202 708.4 398 83.4
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 4.3e-200 701.4 390 84.6
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.8e-199 698.7 430 75.6
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.2e-198 694.5 430 74.9
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.2e-197 693.3 431 75.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.5e-197 693.0 407 79.4
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.5e-192 676.4 427 74.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.6e-191 672.9 430 73.7
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.1e-191 672.5 438 71.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.8e-190 667.5 431 73.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.4e-189 665.2 440 70.2
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.9e-188 661.4 431 71.2
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.4e-187 659.1 439 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.3e-185 652.5 426 71.6
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 6.6e-185 651.0 427 71.0
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-182 643.3 439 67.2
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.5e-181 639.8 436 72.2
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 4.2e-179 631.7 340 86.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 3.3e-176 622.1 339 86.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 4.8e-175 618.2 427 67.9
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.3e-174 614.8 430 65.1
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.9e-174 614.4 438 64.8
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.8e-173 611.3 329 86.3
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 9.9e-173 610.5 341 83.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.5e-170 602.1 390 74.1
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.6e-165 585.9 443 61.6
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.3e-164 583.6 432 62.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.3e-164 583.6 443 61.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 5.5e-163 578.2 354 77.4
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-161 573.9 440 66.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.4e-158 563.5 426 61.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.4e-157 558.9 439 61.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 5.5e-155 551.6 294 87.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 9.7e-144 514.2 335 71.6
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.4e-142 510.4 428 58.2
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.2e-141 507.3 358 67.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.8e-140 502.3 382 65.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 4.8e-127 458.8 442 50.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.5e-120 437.2 240 87.1
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 3.8e-116 422.5 352 62.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.9e-108 396.4 221 84.2
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 2.5e-99 366.7 228 78.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-79 300.8 157 89.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.7e-79 299.7 185 75.1
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.2e-72 278.1 151 83.4
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.0e-68 265.0 197 66.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 5.3e-65 252.7 145 82.1
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.9e-60 236.5 134 82.8
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.1e-60 236.1 235 56.2
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.7e-50 203.4 112 83.9
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.8e-48 196.1 107 78.5
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 5.8e-40 169.5 137 62.0
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.9e-38 164.5 88 85.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.5e-37 160.2 93 80.6
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.9e-35 154.5 165 50.9
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.1e-33 147.1 204 40.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.1e-33 146.7 82 84.1
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 8.2e-26 122.5 77 76.6
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 4.2e-22 110.2 57 80.7
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.5e-22 109.8 242 33.1
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.4e-22 109.0 67 70.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.0e-20 105.5 62 80.6
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.0e-19 101.3 66 63.6
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.9e-14 84.7 121 44.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 4.2e-14 83.6 94 48.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.1e-13 81.3 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 4.4e-11 73.6 186 29.0
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 4.1e-09 67.0 35 82.9
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 2.7e-08 64.3 347 24.5
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 2.2e-07 61.2 69 50.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 9.4e-06 55.8 35 62.9


User provided reference genes

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