Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 8.9e-69 263.5 131 100.0
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 4.4e-52 208.0 133 79.7
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 4.9e-51 204.5 136 80.9
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 6.8e-45 184.1 136 72.8
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 9.9e-44 180.3 127 71.7
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 1.7e-43 179.5 126 71.4
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 1.7e-43 179.5 126 71.4
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 8.4e-43 177.2 130 68.5
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 8.4e-43 177.2 127 75.6
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 2.3e-40 169.1 126 68.3
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 3.3e-39 165.2 127 66.1
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 6.9e-37 157.5 130 64.6
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 1.1e-34 150.2 126 59.5
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 1.1e-34 150.2 126 59.5
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 1.4e-34 149.8 128 64.1
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 2.7e-33 145.6 125 61.6
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 2.7e-33 145.6 135 61.5
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 7.9e-33 144.1 125 60.8
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.7e-32 142.9 129 62.0
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 3.0e-32 142.1 125 60.8
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 5.1e-32 141.4 133 57.9
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 5.1e-32 141.4 125 59.2
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 5.1e-32 141.4 129 58.9
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 6.6e-32 141.0 125 56.8
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.1e-31 140.2 133 54.1
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 3.3e-31 138.7 127 57.5
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 3.3e-31 138.7 128 58.6
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 4.3e-31 138.3 133 56.4
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 5.6e-31 137.9 129 55.0
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 5.6e-31 137.9 129 57.4
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 5.6e-31 137.9 134 56.0
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 5.6e-31 137.9 129 55.8
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 9.6e-31 137.1 126 54.8
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 1.3e-30 136.7 128 57.8
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.3e-30 136.7 127 55.1
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 1.6e-30 136.3 128 57.0
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 2.8e-30 135.6 125 54.4
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 2.8e-30 135.6 125 53.6
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 2.8e-30 135.6 125 54.4
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 2.8e-30 135.6 129 56.6
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 2.8e-30 135.6 126 55.6
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.6e-30 135.2 129 57.4
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 4.8e-30 134.8 125 54.4
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 6.2e-30 134.4 127 58.3
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 6.2e-30 134.4 129 55.8
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.1e-29 133.7 125 53.6
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.4e-29 133.3 129 55.0
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 1.4e-29 133.3 129 56.6
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 1.8e-29 132.9 129 56.6
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.8e-29 132.9 125 52.8
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 1.8e-29 132.9 128 54.7
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.4e-29 132.5 130 56.9
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 3.1e-29 132.1 130 55.4
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 4.0e-29 131.7 130 53.1
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 4.0e-29 131.7 126 54.0
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 5.3e-29 131.3 129 52.7
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 5.3e-29 131.3 127 56.7
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 5.3e-29 131.3 127 54.3
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 6.9e-29 131.0 125 52.0
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 9.0e-29 130.6 127 56.7
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 1.2e-28 130.2 129 49.6
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 1.2e-28 130.2 126 53.2
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.0e-28 129.4 127 55.9
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 2.0e-28 129.4 127 55.9
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 3.4e-28 128.6 125 52.0
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 5.8e-28 127.9 129 51.9
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 1.7e-27 126.3 133 49.6
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 2.2e-27 125.9 130 52.3
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 6.4e-27 124.4 125 53.6
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.1e-26 123.6 118 54.2
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 2.7e-25 119.0 128 53.1
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 7.9e-25 117.5 129 48.8
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.0e-24 117.1 133 50.4
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 5.1e-24 114.8 114 51.8
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.1e-23 113.6 113 51.3
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.9e-23 112.8 125 47.2
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 3.3e-23 112.1 126 52.4
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 5.6e-23 111.3 129 46.5
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 7.4e-23 110.9 130 52.3
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 4.8e-22 108.2 117 50.4
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 6.2e-22 107.8 110 50.9
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.1e-21 107.1 133 47.4
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 2.4e-21 105.9 115 47.0
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 2.0e-20 102.8 135 45.2
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 2.0e-20 102.8 126 44.4
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 3.8e-19 98.6 135 44.4
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 2.5e-18 95.9 133 41.4
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 1.2e-17 93.6 128 40.6
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 4.6e-17 91.7 128 43.0
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 6.0e-17 91.3 128 41.4
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.0e-16 90.5 105 46.7
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 1.0e-16 90.5 127 40.2
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 1.3e-16 90.1 129 40.3
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 1.3e-16 90.1 128 43.0
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 1.3e-16 90.1 128 43.0
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-16 89.7 128 42.2
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-16 89.7 128 42.2
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-16 89.7 128 42.2
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-16 89.7 128 42.2
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 1.8e-16 89.7 128 42.2
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 3.0e-16 89.0 128 42.2
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 6.7e-16 87.8 129 41.9
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 6.7e-16 87.8 81 54.3
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 8.7e-16 87.4 126 39.7
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 1.9e-15 86.3 129 41.1
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 1.9e-15 86.3 129 41.1
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 2.5e-15 85.9 130 40.0
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 2.5e-15 85.9 125 41.6
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 4.3e-15 85.1 118 43.2
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 5.7e-15 84.7 128 41.4
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 1.3e-14 83.6 112 41.1
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 3.7e-14 82.0 129 39.5
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 3.7e-14 82.0 129 39.5
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 6.3e-14 81.3 122 39.3
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 5.3e-13 78.2 98 42.9
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 2.6e-12 75.9 120 40.8
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 7.6e-12 74.3 79 45.6
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 2.2e-11 72.8 110 40.0
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.4e-10 70.1 104 42.3
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.3e-08 63.5 126 40.5


User provided reference genes

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