Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24547_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 5.6e-121 437.6 214 100.0
Medtr5g010120 Medicago truncatula HOM05D000932 ORTHO05D000729 4.7e-51 205.3 253 52.2
VMungo1215G1926 Vigna mungo HOM05D000932 ORTHO05D000729 2.5e-36 156.4 281 42.7
Phvul.002G158500 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 9.5e-36 154.5 246 44.3
Glyma.11G022600 Glycine max HOM05D000932 ORTHO05D000729 3.1e-34 149.4 272 41.9
Lalb_Chr05g0224621 Lupinus albus HOM05D000932 ORTHO05D000729 4.0e-34 149.1 275 41.1
TPR.G6694 Trifolium pratense HOM05D000604 ORTHO05D004512 4.9e-32 142.1 173 52.0
Glyma.01G221100 Glycine max HOM05D000932 ORTHO05D000729 6.4e-32 141.7 260 43.8
LjContig00312_ERROPOS870357g0008521 Lotus japonicus HOM05D000932 ORTHO05D000729 3.0e-29 132.9 278 39.9
arahy.Tifrunner.gnm1.ann1.BU1BMX Arachis hypogaea HOM05D000932 ORTHO05D000729 5.0e-29 132.1 262 40.1
arahy.Tifrunner.gnm1.ann1.AGT1RS Arachis hypogaea HOM05D000932 ORTHO05D000729 8.6e-29 131.3 262 39.7
Lj4g0000406 Lotus japonicus HOM05D000932 ORTHO05D000729 4.3e-28 129.0 273 38.1
Glyma.05G209800 Glycine max HOM05D000932 ORTHO05D000729 2.8e-27 126.3 268 40.3
Potri.003G130500 Populus trichocarpa HOM05D000932 ORTHO05D000729 4.7e-27 125.6 300 35.7
Phvul.002G291600 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 8.1e-27 124.8 246 39.8
Psat2g184400 Pisum sativum HOM05D000932 ORTHO05D000729 1.4e-26 124.0 240 37.5
VMungo0251G0594 Vigna mungo HOM05D000932 ORTHO05D000729 1.8e-26 123.6 269 39.4
Glyma.08G016500 Glycine max HOM05D000932 ORTHO05D000729 1.5e-25 120.6 251 41.4
Medtr8g098725 Medicago truncatula HOM05D000932 ORTHO05D000729 2.0e-25 120.2 259 37.8
Sabra03G0092800 Salix brachista HOM05D000932 ORTHO05D000729 2.0e-25 120.2 291 35.4
TPR.G12941 Trifolium pratense HOM05D000932 ORTHO05D000729 6.4e-24 115.2 273 36.3
Haze_08815 Corylus avellana HOM05D000932 ORTHO05D000729 1.4e-23 114.0 235 40.0
Sabra01G0076200 Salix brachista HOM05D000932 ORTHO05D000729 3.2e-23 112.8 299 33.4
Manes.01G060500 Manihot esculenta HOM05D000932 ORTHO05D000729 2.1e-22 110.2 298 33.2
CiPaw.12G090900 Carya illinoinensis HOM05D000932 ORTHO05D000729 2.7e-22 109.8 296 34.8
Psat7g031600 Pisum sativum HOM05D000932 ORTHO05D000729 6.6e-21 105.1 258 34.9
QL12p032366 Quercus lobata HOM05D000932 ORTHO05D000729 8.6e-21 104.8 282 36.2
Ciclev10021189m.g Citrus clementina HOM05D000932 ORTHO05D000729 1.1e-20 104.4 272 34.2
TWI60G0720 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 1.5e-20 104.0 211 36.5
Atru.chr9.2152 Acer truncatum HOM05D000932 ORTHO05D000729 4.3e-20 102.4 258 35.7
Cfa012201 Carpinus fangiana HOM05D000932 ORTHO05D000729 7.3e-20 101.7 298 34.6
RcHm_v2.0_Chr7g0197051 Rosa chinensis HOM05D000932 ORTHO05D000729 9.5e-20 101.3 260 35.8
Prupe.5G104100 Prunus persica HOM05D000932 ORTHO05D000729 2.8e-19 99.8 265 36.6
arahy.Tifrunner.gnm1.ann1.BXJN39 Arachis hypogaea HOM05D000932 ORTHO05D000729 8.1e-19 98.2 200 34.0
CiPaw.11G132500 Carya illinoinensis HOM05D000932 ORTHO05D000729 8.1e-19 98.2 198 37.4
Peaxi162Scf00074g02025 Petunia axillaris HOM05D000932 ORTHO05D000729 3.1e-18 96.3 240 33.8
arahy.Tifrunner.gnm1.ann1.B2EAID Arachis hypogaea HOM05D000932 ORTHO05D000729 6.8e-18 95.1 241 33.2
Rhsim07G0088500 Rhododendron simsii HOM05D000932 ORTHO05D000729 6.8e-18 95.1 253 33.2
Dinv38920 Davidia involucrata HOM05D000932 ORTHO05D000729 1.5e-17 94.0 247 34.0
GSVIVG01019393001 Vitis vinifera HOM05D000932 ORTHO05D000729 1.5e-17 94.0 173 38.2
CSS0007952 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 2.0e-17 93.6 261 34.1
MD06G1088000 Malus domestica HOM05D000932 ORTHO05D000729 3.4e-17 92.8 219 37.0
Cc08_g15020 Coffea canephora HOM05D000932 ORTHO05D000729 9.9e-17 91.3 254 34.3
Duzib205G0545 Durio zibethinus HOM05D000932 ORTHO05D000729 1.3e-16 90.9 225 33.3
ECA240G4070 Erigeron canadensis HOM05D000932 ORTHO05D000729 1.3e-16 90.9 222 34.7
FvH4_1g29660 Fragaria vesca HOM05D000932 ORTHO05D000729 1.7e-16 90.5 219 36.5
FAN19G0306 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.7e-16 90.5 219 36.5
EL10Ac5g12804 Beta vulgaris HOM05D000932 ORTHO05D000729 3.8e-16 89.4 170 38.2
Nitab4.5_0004114g0060 Nicotiana tabacum HOM05D000932 ORTHO05D000729 4.9e-16 89.0 267 31.8
Thecc.03G282900 Theobroma cacao HOM05D000932 ORTHO05D000729 4.9e-16 89.0 266 30.5
FAN26G2342 Fragaria x ananassa HOM05D000932 ORTHO05D000729 6.4e-16 88.6 220 35.9
Actinidia33741 Actinidia chinensis HOM05D000932 ORTHO05D000729 1.1e-15 87.8 201 34.3
Aa31LG2G990 Aethionema arabicum HOM05D000932 ORTHO05D000729 5.4e-15 85.5 276 31.9
FAN23G0457 Fragaria x ananassa HOM05D000932 ORTHO05D000729 5.4e-15 85.5 219 35.6
Hma1.2p1_1123F.1_g259400 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 7.1e-15 85.1 261 31.8
Cpa.g.sc180.14 Carica papaya HOM05D000932 ORTHO05D000729 2.1e-14 83.6 227 34.8
Ah.07g196440 Amaranthus hybridus HOM05D000932 ORTHO05D000729 3.5e-14 82.8 212 32.5
CAN.G532.9 Capsicum annuum HOM05D000932 ORTHO05D000729 4.6e-14 82.4 270 31.1
Potri.001G101200 Populus trichocarpa HOM05D000932 ORTHO05D000729 4.6e-14 82.4 172 39.0
Hund11451 Selenicereus undatus HOM05D000932 ORTHO05D000729 7.8e-14 81.6 239 33.5
CsaV3_5G002610 Cucumis sativus L. HOM05D000932 ORTHO05D000729 3.0e-13 79.7 153 34.6
Oeu061387.1 Olea europaea HOM05D000932 ORTHO05D000729 3.0e-13 79.7 270 30.4
MSTRG.11970 Avicennia marina HOM05D000932 ORTHO05D000729 8.6e-13 78.2 221 32.1
MD14G1108900 Malus domestica HOM05D000932 ORTHO05D000729 1.1e-12 77.8 217 35.0
Lsat_1_v5_gn_6_85380 Lactuca sativa HOM05D000932 ORTHO05D000729 1.9e-12 77.0 258 31.4
Migut.A00747 Erythranthe guttata HOM05D000932 ORTHO05D000729 3.3e-12 76.3 276 30.4
TAR629G1819 Trochodendron aralioides HOM05D000932 ORTHO05D000729 3.3e-12 76.3 294 29.6
CARHR212950 Cardamine hirsuta HOM05D000932 ORTHO05D000729 5.6e-12 75.5 255 29.8
Gohir.A08G184100 Gossypium hirsutum HOM05D000932 ORTHO05D000729 5.6e-12 75.5 157 34.4
Sopen08g029670 Solanum pennellii HOM05D000932 ORTHO05D000729 5.6e-12 75.5 260 32.3
HanXRQChr03g0085921 Helianthus annuus HOM05D000932 ORTHO05D000729 7.3e-12 75.1 242 32.2
Duzib068G0955 Durio zibethinus HOM05D000932 ORTHO05D000729 2.1e-11 73.6 159 34.0
Gorai.006G209000 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.1e-11 73.6 178 33.7
Sed0014817 Sechium edule HOM05D000932 ORTHO05D000729 2.1e-11 73.6 157 34.4
Gohir.D08G202600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.8e-11 73.2 205 32.2
Gohir.D11G022399 Gossypium hirsutum HOM05D000932 ORTHO05D000729 4.7e-11 72.4 116 39.7
Gorai.004G214000 Gossypium raimondii HOM05D000932 ORTHO05D000729 4.7e-11 72.4 205 32.2
Solyc08g081350.2 Solanum lycopersicum HOM05D000932 ORTHO05D000729 4.7e-11 72.4 263 31.9
ClCG01G002510 Citrullus lanatus HOM05D000932 ORTHO05D000729 6.2e-11 72.0 266 30.1
Gohir.A09G192000 Gossypium hirsutum HOM05D000932 ORTHO05D000729 6.2e-11 72.0 178 33.1
PGSC0003DMG400012193 Solanum tuberosum HOM05D000932 ORTHO05D000729 6.2e-11 72.0 264 31.8
Gorai.007G023900 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.1e-10 71.2 116 39.7
AL7G48040 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 1.4e-10 70.9 219 29.7
Oeu059560.1 Olea europaea HOM05D000932 ORTHO05D000729 1.4e-10 70.9 246 31.3
BcaB06g27617 Brassica carinata HOM05D000932 ORTHO05D000729 1.8e-10 70.5 242 32.2
vmacro13964 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 1.8e-10 70.5 197 32.0
A04p14510 Brassica napus HOM05D000932 ORTHO05D000729 3.1e-10 69.7 233 31.8
BraA04t17096Z Brassica rapa HOM05D000932 ORTHO05D000729 3.1e-10 69.7 233 31.8
Gohir.A11G022833 Gossypium hirsutum HOM05D000932 ORTHO05D000729 3.1e-10 69.7 176 32.4
HanXRQChr13g0394131 Helianthus annuus HOM05D000932 ORTHO05D000729 3.1e-10 69.7 225 30.2
THA.LOC104817876 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 5.2e-10 68.9 274 30.7
Carub.0007s3410 Capsella rubella HOM05D000932 ORTHO05D000729 6.9e-10 68.6 229 30.6
BolC6t37167H Brassica oleracea HOM05D000932 ORTHO05D000729 8.9e-10 68.2 203 33.0
BcaC02g08961 Brassica carinata HOM05D000932 ORTHO05D000729 1.2e-09 67.8 245 31.0
C04p48430 Brassica napus HOM05D000932 ORTHO05D000729 1.2e-09 67.8 245 31.0
BolC4t26435H Brassica oleracea HOM05D000932 ORTHO05D000729 1.2e-09 67.8 245 31.0
Gohir.D09G186300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.2e-09 67.8 277 27.8
BcaC08g44527 Brassica carinata HOM05D000932 ORTHO05D000729 1.5e-09 67.4 187 33.7
C06p19800 Brassica napus HOM05D000932 ORTHO05D000729 1.5e-09 67.4 187 33.7
PGR042G2581 Punica granatum HOM05D000932 ORTHO05D000729 1.5e-09 67.4 179 31.3
THA.LOC104809375 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 2.0e-09 67.0 277 30.0
TAR636G0780 Trochodendron aralioides HOM05D000932 ORTHO05D000729 2.6e-09 66.6 262 26.3
AT5G41380 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 3.4e-09 66.2 240 29.6
Dinv32825 Davidia involucrata HOM05D000932 ORTHO05D000729 3.4e-09 66.2 69 49.3
Dinv37618 Davidia involucrata HOM05D000932 ORTHO05D000729 3.4e-09 66.2 55 58.2
MELO3C005695.2 Cucumis melo HOM05D000932 ORTHO05D000729 4.4e-09 65.9 48 64.6
SpUn0010_0050 Schrenkiella parvula HOM05D000932 ORTHO05D000729 4.4e-09 65.9 250 31.6
FAN28G0866 Fragaria x ananassa HOM05D000932 ORTHO05D000729 5.8e-09 65.5 55 60.0
CSS0010735 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 1.3e-08 64.3 69 46.4
MBI04_g00371_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 1.3e-08 64.3 55 60.0
Sp7g00570 Schrenkiella parvula HOM05D000932 ORTHO05D000729 1.3e-08 64.3 254 31.1
Gohir.A12G231000 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.7e-08 63.9 57 59.6
Gohir.D12G232100 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.7e-08 63.9 57 59.6
Gorai.008G248400 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.7e-08 63.9 57 59.6
Nn1g01593 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.7e-08 63.9 213 28.6
Oeu007741.1 Olea europaea HOM05D000932 ORTHO05D000729 1.7e-08 63.9 255 27.5
Sp2g00890 Schrenkiella parvula HOM05D000932 ORTHO05D000729 1.7e-08 63.9 151 33.1
COL.COLO4_34499 Corchorus olitorius HOM05D000932 ORTHO05D000729 2.2e-08 63.5 85 43.5
MBI04_g00369_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.2e-08 63.5 221 27.1
PGR031G0503 Punica granatum HOM05D000932 ORTHO05D000729 2.2e-08 63.5 151 36.4
Hma1.2p1_0377F.1_g139450 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 2.9e-08 63.2 171 33.3
Lsat_1_v5_gn_6_4580 Lactuca sativa HOM05D000932 ORTHO05D000729 4.9e-08 62.4 278 27.3
Thhalv10028337m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 6.4e-08 62.0 264 30.3
Sed0000359 Sechium edule HOM05D000932 ORTHO05D000729 6.4e-08 62.0 206 29.1
Nn6g33335 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.1e-07 61.2 235 27.7
FvH4_5g02850 Fragaria vesca HOM05D000932 ORTHO05D000729 1.4e-07 60.8 221 26.7
Eucgr.E00639 Eucalyptus grandis HOM05D000932 ORTHO05D000729 1.9e-07 60.5 211 28.9
Nitab4.5_0001522g0030 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.9e-07 60.5 189 30.7
FAN08G3463 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.4e-07 60.1 210 26.7
DCAR_000626 Daucus carota HOM05D000932 ORTHO05D000729 3.2e-07 59.7 217 31.3
Hund05021 Selenicereus undatus HOM05D000932 ORTHO05D000729 3.2e-07 59.7 57 54.4
CARHR047380 Cardamine hirsuta HOM05D000932 ORTHO05D000729 4.2e-07 59.3 55 56.4
Manes.02G021800 Manihot esculenta HOM05D000932 ORTHO05D000729 4.2e-07 59.3 247 27.1
BcaB07g31411 Brassica carinata HOM05D000932 ORTHO05D000729 7.1e-07 58.5 55 52.7
A09p15300 Brassica napus HOM05D000932 ORTHO05D000729 9.3e-07 58.2 55 52.7
BraA09t37175Z Brassica rapa HOM05D000932 ORTHO05D000729 9.3e-07 58.2 55 52.7
Lj3g0019030 Lotus japonicus HOM05D000932 ORTHO05D000729 9.3e-07 58.2 57 49.1
Sc22g0005470 Simmondsia chinensis HOM05D000932 ORTHO05D000729 9.3e-07 58.2 96 38.5
Glyma.11G146690 Glycine max HOM05D000932 ORTHO05D000729 1.6e-06 57.4 57 50.9
DCAR_008365 Daucus carota HOM05D000932 ORTHO05D000729 2.1e-06 57.0 268 29.5
MD03G1105500 Malus domestica HOM05D000932 ORTHO05D000729 2.1e-06 57.0 57 49.1
AL2G11320 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 3.5e-06 56.2 56 53.6
AT1G63820 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 3.5e-06 56.2 56 53.6
ECA233G3587 Erigeron canadensis HOM05D000932 ORTHO05D000729 4.6e-06 55.8 158 32.3
Thhalv10023638m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 4.6e-06 55.8 244 27.9
TAR633G1858 Trochodendron aralioides HOM05D000932 ORTHO05D000729 6.0e-06 55.5 76 39.5
Duzib168G1389 Durio zibethinus HOM05D000932 ORTHO05D000729 7.8e-06 55.1 57 45.6
Lj8A218T21 Lonicera japonica HOM05D000932 ORTHO05D000729 7.8e-06 55.1 156 30.8
MD11G1118000 Malus domestica HOM05D000932 ORTHO05D000729 7.8e-06 55.1 57 47.4


User provided reference genes

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