Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.9e-116 422.5 223 100.0
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 2.8e-115 418.7 223 99.1
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.6e-89 333.2 224 79.9
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 1.2e-86 323.6 226 78.8
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 2.7e-86 322.4 224 79.0
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 8.0e-86 320.9 222 78.8
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 1.8e-85 319.7 225 79.1
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 3.0e-77 292.4 225 74.2
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 5.0e-72 275.0 226 69.0
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 6.6e-72 274.6 226 66.4
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 6.1e-70 268.1 208 72.1
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 1.2e-68 263.8 238 65.5
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 1.2e-68 263.8 225 65.3
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 1.5e-68 263.5 241 63.5
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 7.5e-68 261.2 224 62.9
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 1.1e-66 257.3 243 60.1
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 3.2e-66 255.8 233 60.1
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 4.1e-66 255.4 229 64.2
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 9.2e-66 254.2 225 60.9
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 9.2e-66 254.2 224 62.9
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 9.2e-66 254.2 245 61.2
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 1.2e-65 253.8 227 62.6
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 1.6e-65 253.4 241 60.2
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 2.0e-65 253.1 233 63.5
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 2.0e-65 253.1 241 60.6
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.0e-64 250.8 248 58.9
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 1.3e-64 250.4 227 63.0
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.7e-64 250.0 248 58.9
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 3.0e-64 249.2 241 60.2
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 2.5e-63 246.1 227 60.4
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 4.3e-63 245.4 226 61.1
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 4.3e-63 245.4 227 60.4
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 9.5e-63 244.2 248 57.7
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 9.5e-63 244.2 229 61.1
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 9.5e-63 244.2 226 60.6
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 9.5e-63 244.2 226 60.6
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 2.1e-62 243.0 253 58.5
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 2.8e-62 242.7 253 58.5
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 4.7e-62 241.9 226 60.2
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 8.0e-62 241.1 245 58.4
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 5.2e-61 238.4 227 59.5
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 1.2e-60 237.3 226 61.1
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 2.6e-60 236.1 230 60.0
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 3.4e-60 235.7 228 57.0
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 7.5e-60 234.6 238 59.2
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.7e-59 233.4 224 60.3
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.7e-59 233.4 237 57.4
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-59 233.4 223 61.4
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 3.7e-59 232.3 249 56.6
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 4.9e-59 231.9 224 58.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 1.4e-58 230.3 244 54.1
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 1.4e-58 230.3 198 68.2
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 4.1e-58 228.8 229 55.5
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 5.4e-58 228.4 229 55.5
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 1.2e-57 227.3 221 60.2
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 2.0e-57 226.5 230 57.0
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 2.7e-57 226.1 235 56.6
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 4.6e-57 225.3 247 56.3
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 1.0e-56 224.2 192 69.8
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 1.0e-56 224.2 244 53.3
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 3.0e-56 222.6 228 54.4
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 5.0e-56 221.9 234 56.4
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 6.6e-56 221.5 253 53.8
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 9.5e-55 217.6 245 56.7
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 1.6e-54 216.9 237 54.4
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 1.6e-54 216.9 224 55.8
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 2.8e-54 216.1 232 54.3
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 8.1e-54 214.5 237 54.4
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 1.1e-53 214.2 294 46.6
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.1e-53 214.2 256 53.1
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 3.1e-53 212.6 159 73.0
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 6.8e-53 211.5 159 72.3
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.2e-52 210.7 225 54.7
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 7.5e-52 208.0 190 62.6
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 7.1e-50 201.4 202 59.4
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 9.2e-50 201.1 197 58.4
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.5e-49 199.1 217 52.5
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 7.8e-49 198.0 201 58.2
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 3.9e-48 195.7 203 59.1
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.8e-45 186.8 195 58.5
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 5.8e-44 181.8 223 52.9
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 9.9e-44 181.0 238 47.9
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 4.6e-41 172.2 235 44.3
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 4.6e-41 172.2 235 44.3
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 4.6e-41 172.2 235 44.3
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 1.0e-40 171.0 235 44.3
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 1.0e-40 171.0 235 44.3
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.3e-40 170.6 228 45.2
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 1.3e-40 170.6 106 87.7
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.7e-40 170.2 235 44.3
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 2.3e-40 169.9 165 58.2
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 3.0e-40 169.5 212 50.5
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 3.9e-40 169.1 225 45.8
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 5.1e-40 168.7 228 45.2
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.1e-39 167.5 102 86.3
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.1e-39 167.5 102 86.3
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-39 167.5 124 73.4
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 1.9e-39 166.8 174 56.9
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 4.3e-39 165.6 229 46.3
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 5.6e-39 165.2 103 80.6
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 9.6e-39 164.5 283 42.4
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 1.6e-38 163.7 118 74.6
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 1.6e-38 163.7 228 45.2
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 2.8e-38 162.9 109 80.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 6.2e-38 161.8 190 51.1
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-37 161.0 166 57.2
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 2.4e-37 159.8 229 42.4
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.1e-37 159.5 96 83.3
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 6.9e-37 158.3 266 43.2
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 4.9e-35 152.1 260 38.8
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 1.4e-34 150.6 253 41.1
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 2.8e-30 136.3 241 40.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-29 134.4 88 78.4
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 9.0e-29 131.3 226 40.7
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 4.2e-26 122.5 169 49.1
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 1.9e-23 113.6 164 46.3
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 7.4e-23 111.7 257 33.5
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 4.8e-22 109.0 122 50.8
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.4e-21 107.5 252 32.5
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 6.9e-21 105.1 129 46.5
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 3.4e-20 102.8 221 33.5
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 4.5e-20 102.4 128 49.2
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.3e-19 100.9 62 82.3
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.1e-18 97.8 66 72.7
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.1e-17 93.6 138 44.9
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 2.7e-17 93.2 140 43.6
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 3.5e-17 92.8 62 75.8
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.0e-16 91.3 138 43.5
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.8e-16 90.5 153 39.9
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.8e-16 90.5 50 90.0
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 6.7e-16 88.6 169 40.8
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.5e-15 87.4 168 38.7
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.5e-12 77.4 62 71.0
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 3.2e-10 69.7 98 44.9
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 3.3e-07 59.7 221 28.5
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 5.7e-07 58.9 52 50.0
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 9.6e-07 58.2 31 87.1


User provided reference genes

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