Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 6.0e-138 494.2 255 100.0
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 3.1e-102 375.6 254 75.2
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 3.7e-87 325.5 247 71.3
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 1.6e-85 320.1 251 67.7
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 1.6e-82 310.1 247 66.8
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 4.0e-81 305.4 252 65.5
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 4.2e-75 285.4 219 66.2
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 7.2e-75 284.6 260 60.8
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 1.6e-74 283.5 208 70.7
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.7e-63 246.9 207 62.3
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 8.3e-63 244.6 205 62.0
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 2.4e-62 243.0 238 55.5
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 4.1e-62 242.3 231 58.4
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 5.4e-62 241.9 257 56.4
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 5.4e-62 241.9 250 56.0
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 7.0e-62 241.5 265 53.6
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 9.2e-62 241.1 250 56.0
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 1.2e-61 240.7 245 54.7
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 1.6e-61 240.4 201 62.7
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 1.0e-60 237.7 205 64.4
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 2.3e-60 236.5 208 63.9
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 2.3e-60 236.5 207 61.4
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 8.6e-60 234.6 195 64.6
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 1.9e-59 233.4 205 62.4
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 2.5e-59 233.0 201 61.7
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 4.3e-59 232.3 201 62.2
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 7.3e-59 231.5 219 57.1
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.6e-58 230.3 253 53.4
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.4e-57 227.3 208 60.1
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 2.3e-57 226.5 240 52.5
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 2.3e-57 226.5 207 58.5
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 2.3e-57 226.5 209 58.9
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 3.1e-57 226.1 174 65.5
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 1.5e-56 223.8 203 58.6
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 2.0e-56 223.4 201 59.2
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 5.8e-56 221.9 253 51.0
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 5.8e-56 221.9 205 61.0
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 5.8e-56 221.9 205 58.0
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 9.8e-56 221.1 211 60.2
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 2.2e-55 219.9 211 58.8
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 2.9e-55 219.5 213 58.7
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 6.4e-55 218.4 206 57.8
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 1.4e-54 217.2 216 53.7
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 1.4e-54 217.2 208 58.7
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 1.9e-54 216.9 207 56.5
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 5.4e-54 215.3 205 57.1
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 5.4e-54 215.3 247 50.6
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.2e-53 214.2 158 70.3
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 2.7e-53 213.0 203 57.6
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 6.0e-53 211.8 209 58.4
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 6.0e-53 211.8 210 56.2
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 7.8e-53 211.5 211 58.3
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 1.3e-52 210.7 208 57.2
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 3.0e-52 209.5 194 58.2
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 3.9e-52 209.1 198 58.6
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 2.5e-51 206.5 198 58.1
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 3.3e-51 206.1 178 61.8
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 4.3e-51 205.7 204 59.3
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 4.3e-51 205.7 207 53.6
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 4.3e-51 205.7 241 49.8
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 9.5e-51 204.5 201 58.2
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 1.2e-50 204.1 204 53.4
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.6e-50 203.8 230 49.1
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 1.6e-50 203.8 212 53.8
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 2.1e-50 203.4 146 71.9
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 2.1e-50 203.4 174 58.0
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 6.8e-49 198.4 179 59.2
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 6.8e-49 198.4 179 59.2
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 6.8e-49 198.4 246 49.6
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 8.9e-49 198.0 217 53.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.2e-48 197.6 193 57.0
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 1.2e-48 197.6 193 57.0
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 1.5e-48 197.2 173 59.0
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 2.6e-48 196.4 252 49.2
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 3.4e-48 196.1 159 62.9
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 4.4e-48 195.7 148 66.2
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 5.8e-48 195.3 185 58.4
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 7.6e-48 194.9 209 52.2
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 7.6e-48 194.9 181 56.9
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 9.9e-48 194.5 134 73.1
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 1.7e-47 193.7 188 55.3
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 2.2e-47 193.4 202 53.0
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 2.2e-47 193.4 197 54.3
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.7e-47 192.6 237 47.3
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 6.4e-47 191.8 127 70.9
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.9e-46 190.3 199 57.3
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 1.9e-46 190.3 209 49.8
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 3.2e-46 189.5 253 48.2
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 5.4e-46 188.7 136 66.9
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 9.2e-46 188.0 160 58.8
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 1.2e-45 187.6 198 49.5
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 1.6e-45 187.2 170 59.4
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 1.6e-45 187.2 256 44.5
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 1.6e-45 187.2 253 48.2
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 4.6e-45 185.7 188 51.6
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 7.8e-45 184.9 168 56.5
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 7.8e-45 184.9 168 56.5
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 1.0e-44 184.5 139 64.7
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 1.3e-44 184.1 168 57.1
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.3e-44 183.3 206 51.9
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.5e-43 180.6 179 51.4
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 4.3e-43 179.1 132 65.9
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 2.1e-42 176.8 207 49.3
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 3.6e-42 176.0 206 50.5
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 2.6e-40 169.9 202 51.5
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 6.4e-39 165.2 191 50.3
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 8.4e-39 164.9 240 43.8
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 4.3e-35 152.5 209 44.5
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 1.8e-33 147.1 127 57.5
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 2.4e-33 146.7 85 77.6
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 2.4e-33 146.7 211 40.3
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 1.5e-32 144.1 120 55.8
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 7.6e-32 141.7 140 51.4
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 3.8e-31 139.4 113 56.6
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 1.1e-30 137.9 119 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 3.2e-30 136.3 117 53.8
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 7.9e-29 131.7 87 73.6
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 7.3e-27 125.2 128 51.6
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 3.6e-26 122.9 136 47.8
TPR.G22067 Trifolium pratense HOM05D007016 ORTHO05D008847 3.4e-24 116.3 93 68.8
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 1.3e-23 114.4 254 34.6
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 2.4e-22 110.2 97 54.6
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 3.2e-22 109.8 236 37.7
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 4.3e-19 99.4 108 53.7


User provided reference genes

Program Settings