Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.1e-143 512.3 256 100.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 4.1e-118 428.3 254 83.9
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.7e-116 422.9 254 81.9
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.9e-115 419.5 254 83.1
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.0e-113 412.1 254 82.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 3.7e-111 405.2 254 81.5
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.9e-109 397.9 254 78.3
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.9e-107 392.9 255 79.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 5.7e-104 381.3 254 76.8
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.3e-103 380.2 254 76.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 5.0e-100 368.2 254 73.6
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 4.7e-98 361.7 236 78.4
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 2.3e-97 359.4 246 75.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 4.1e-94 348.6 254 73.6
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.7e-85 319.3 227 70.9
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 6.4e-79 298.1 240 62.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.6e-77 293.5 254 58.7
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 4.6e-77 292.0 255 58.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 6.0e-77 291.6 255 57.6
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 6.0e-77 291.6 255 57.6
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.0e-76 289.3 256 57.0
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.9e-76 288.9 255 58.8
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 5.0e-76 288.5 256 56.2
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.5e-75 287.0 256 56.2
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 2.5e-75 286.2 238 60.5
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 4.3e-75 285.4 254 56.7
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 4.3e-75 285.4 256 57.4
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 4.7e-74 282.0 254 55.5
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.1e-73 280.8 238 59.2
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 6.8e-73 278.1 213 69.0
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.5e-72 276.9 256 55.1
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.0e-72 276.6 256 55.1
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.0e-72 276.6 233 57.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.4e-72 275.8 256 55.5
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 9.8e-72 274.2 256 55.9
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 9.8e-72 274.2 256 57.4
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.7e-71 273.5 256 52.7
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.4e-71 271.6 257 57.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.4e-71 271.6 254 57.5
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.9e-70 270.0 215 66.5
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.4e-70 269.6 258 52.3
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.4e-70 269.6 272 53.3
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 5.4e-70 268.5 242 55.4
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.6e-69 266.9 235 56.2
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.6e-69 266.9 238 55.5
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.5e-69 265.8 243 56.4
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 4.6e-69 265.4 237 54.9
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 8.6e-68 261.2 238 55.0
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.6e-68 261.2 257 56.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.1e-67 260.8 237 56.5
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 2.1e-66 256.5 237 54.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.8e-66 256.1 191 65.4
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.6e-66 255.8 235 56.6
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 4.7e-66 255.4 226 56.6
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 8.1e-66 254.6 254 52.4
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 8.9e-65 251.1 239 55.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.2e-64 250.8 253 50.6
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.2e-64 250.8 254 49.6
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.0e-64 250.0 256 53.1
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.9e-63 246.1 236 51.3
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 6.4e-63 245.0 231 56.3
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.1e-62 244.2 236 53.4
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.4e-62 243.8 255 51.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 4.1e-62 242.3 250 49.6
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.4e-62 241.9 237 53.2
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.6e-61 240.4 254 48.8
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.1e-61 240.0 254 50.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.5e-61 239.2 232 55.6
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.5e-61 239.2 208 58.2
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.6e-61 238.8 240 52.9
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 6.0e-61 238.4 254 49.2
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 6.0e-61 238.4 235 50.2
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.0e-60 237.7 256 51.6
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.0e-60 236.1 239 52.3
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 3.9e-60 235.7 254 48.8
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.1e-60 235.3 235 52.8
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 6.6e-60 235.0 255 49.4
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.1e-59 234.2 255 47.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.1e-59 234.2 240 52.1
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.5e-59 233.0 254 48.8
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.5e-59 233.0 234 51.3
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.6e-59 231.9 240 50.0
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 5.6e-59 231.9 256 49.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 5.6e-59 231.9 255 48.2
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 5.6e-59 231.9 209 56.5
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.3e-59 231.5 234 50.9
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 7.3e-59 231.5 247 48.2
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 7.3e-59 231.5 254 46.9
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 9.5e-59 231.1 254 48.4
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.2e-58 230.7 236 49.6
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.6e-58 230.3 255 48.2
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.6e-58 230.3 255 48.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.6e-58 230.3 255 47.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.6e-58 230.3 239 51.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 3.6e-58 229.2 254 48.0
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.6e-58 229.2 256 47.7
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.7e-58 228.8 256 47.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 8.1e-58 228.0 227 50.2
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.8e-57 226.9 210 55.7
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.8e-57 226.9 210 55.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.4e-57 226.5 256 47.3
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.0e-57 225.7 237 52.3
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.0e-57 225.7 237 48.9
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 8.9e-57 224.6 255 47.5
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 8.9e-57 224.6 254 47.2
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.5e-56 223.8 236 50.8
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.4e-56 222.6 256 46.1
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.4e-56 222.6 185 63.2
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 5.8e-56 221.9 255 44.7
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.3e-55 220.7 254 46.5
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.2e-55 219.9 202 54.0
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 4.9e-55 218.8 257 46.3
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 8.4e-55 218.0 265 43.4
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 8.4e-55 218.0 244 48.8
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.2e-54 216.1 182 60.4
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 5.4e-54 215.3 238 45.8
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.4e-54 215.3 221 54.8
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 7.1e-54 214.9 224 54.0
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.6e-53 213.8 240 45.8
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-51 207.6 230 49.6
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.9e-51 206.8 166 60.8
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.9e-51 206.8 233 47.6
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 2.5e-51 206.5 244 45.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.3e-51 206.1 244 45.1
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.7e-50 202.2 245 43.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.4e-49 199.9 230 50.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.0e-49 198.0 190 54.7
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.0e-49 198.0 190 54.7
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.4e-48 196.1 255 44.7
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 4.4e-48 195.7 139 75.5
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.4e-46 190.7 191 49.2
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 7.8e-45 184.9 210 45.7
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.6e-44 181.8 212 48.1
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.5e-43 179.9 244 38.9
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.6e-37 160.6 262 39.7
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 6.7e-36 155.2 244 36.5
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 4.3e-35 152.5 156 51.3
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.4e-33 146.7 237 37.1
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.2e-29 134.4 101 62.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.8e-25 120.6 111 52.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 3.1e-25 119.8 186 39.8
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 4.0e-25 119.4 168 44.0
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.9e-23 112.5 86 59.3
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.2e-21 107.8 86 64.0
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.9e-19 100.5 248 28.6
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 4.3e-19 99.4 87 56.3
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.3e-19 99.4 148 38.5
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.6e-18 97.4 115 43.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-17 94.4 147 35.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 9.0e-17 91.7 73 54.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.0e-11 73.9 83 48.2
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 7.2e-06 55.5 34 70.6


User provided reference genes

Program Settings