Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.8e-153 545.8 256 100.0
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 4.0e-142 508.1 268 88.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.9e-139 499.2 269 85.5
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-137 493.4 260 88.1
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 2.3e-137 492.3 260 87.7
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 3.9e-137 491.5 265 86.4
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 6.7e-137 490.7 265 86.8
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.9e-136 489.2 257 87.9
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 7.4e-136 487.3 256 87.1
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.7e-135 485.0 260 86.9
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.8e-134 482.6 253 87.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 9.0e-134 480.3 257 86.0
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.2e-132 475.7 255 85.9
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.2e-131 471.9 253 86.2
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.7e-130 468.8 257 84.4
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.6e-130 468.0 250 84.4
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.8e-129 466.1 257 80.9
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 6.7e-129 464.2 254 83.9
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 8.8e-129 463.8 259 83.4
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 2.5e-128 462.2 254 83.5
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.3e-128 461.8 255 83.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 7.4e-128 460.7 257 81.3
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 7.4e-128 460.7 253 83.0
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 9.7e-128 460.3 256 82.4
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 2.2e-127 459.1 254 81.1
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.2e-127 459.1 254 82.3
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 8.2e-127 457.2 253 82.6
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.1e-126 456.8 257 80.9
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.4e-126 456.4 252 82.5
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.4e-126 455.7 250 82.8
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.4e-126 455.7 253 82.2
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 3.1e-126 455.3 255 81.2
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 3.1e-126 455.3 251 82.9
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.1e-126 454.9 257 81.3
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 5.3e-126 454.5 250 82.4
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 6.9e-126 454.1 250 82.4
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.9e-126 454.1 250 80.8
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 9.1e-126 453.8 244 84.0
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 9.1e-126 453.8 243 81.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.2e-125 453.4 250 82.4
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.5e-125 453.0 252 81.0
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.5e-125 453.0 250 82.8
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.0e-125 452.6 250 82.4
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 3.4e-125 451.8 250 80.4
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 4.5e-125 451.4 255 82.0
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.9e-125 451.1 250 80.0
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 5.9e-125 451.1 247 83.0
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.3e-124 449.9 241 83.4
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.1e-123 446.8 253 80.6
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.4e-123 446.4 238 84.0
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.9e-123 446.0 254 79.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.9e-123 446.0 254 80.7
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.2e-123 445.3 254 79.9
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 3.2e-123 445.3 256 79.3
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 4.2e-123 444.9 236 83.1
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 9.4e-123 443.7 254 79.9
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.2e-122 443.4 254 79.5
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.2e-122 443.4 253 79.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.6e-122 443.0 254 79.5
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.6e-122 443.0 254 79.5
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 2.7e-122 442.2 235 84.7
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.0e-121 440.3 253 79.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.4e-121 439.9 253 77.9
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 2.3e-121 439.1 253 77.5
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 3.9e-121 438.3 233 82.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 5.1e-121 438.0 253 78.7
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 5.1e-121 438.0 253 78.7
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 5.1e-121 438.0 252 79.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 5.1e-121 438.0 243 79.4
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 8.8e-121 437.2 253 77.9
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.0e-120 436.0 243 81.5
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 2.0e-120 436.0 253 78.3
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-120 435.6 252 79.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.4e-120 434.1 244 80.3
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.4e-120 434.1 250 76.8
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.3e-119 433.3 252 77.4
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.3e-119 433.3 234 81.6
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.3e-119 431.0 253 77.1
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 6.3e-119 431.0 253 77.1
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.2e-119 430.6 251 78.5
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.4e-118 429.9 250 77.2
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-118 429.5 253 77.1
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 3.1e-118 428.7 249 77.5
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.1e-118 428.7 244 78.3
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 4.1e-118 428.3 250 78.4
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.3e-118 427.9 242 77.7
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.3e-118 427.9 233 79.8
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 6.9e-118 427.6 252 77.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.1e-118 427.2 242 76.9
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-117 426.8 248 77.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.2e-117 426.8 249 78.3
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.2e-117 426.8 250 74.8
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-117 426.8 244 76.6
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.5e-117 426.4 251 77.3
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.0e-117 426.0 242 77.3
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.0e-117 426.0 251 74.9
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.4e-117 425.2 245 78.0
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.4e-117 425.2 242 76.4
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.5e-117 424.9 251 75.7
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.5e-117 424.9 237 78.1
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 7.7e-117 424.1 233 79.4
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-116 423.7 250 74.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-116 423.7 243 77.0
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.9e-116 422.2 243 77.4
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.9e-116 422.2 227 81.5
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.5e-116 421.0 232 78.9
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 6.5e-116 421.0 252 75.0
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 8.5e-116 420.6 231 78.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.1e-115 420.2 243 77.8
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-115 420.2 252 75.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.2e-115 418.7 242 77.3
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 3.2e-115 418.7 248 73.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.2e-115 418.3 246 74.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 5.5e-115 417.9 236 76.7
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 7.2e-115 417.5 255 73.3
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 7.2e-115 417.5 225 82.7
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 2.1e-114 416.0 251 75.3
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 8.0e-114 414.1 251 74.1
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.0e-113 413.7 252 73.0
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.0e-113 413.7 252 74.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.0e-113 413.7 226 80.1
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.8e-113 412.9 237 76.8
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.8e-113 412.9 252 73.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.8e-113 412.9 226 79.6
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.9e-113 411.8 243 76.1
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 5.2e-113 411.4 243 75.3
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.1e-112 410.2 248 72.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-112 409.8 234 76.5
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.6e-112 409.1 249 74.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 5.7e-112 407.9 250 74.4
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 7.4e-112 407.5 254 72.4
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 7.4e-112 407.5 254 72.4
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 6.3e-111 404.4 224 79.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 6.3e-111 404.4 254 70.1
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 6.3e-111 404.4 243 74.5
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.4e-110 403.3 239 73.6
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.6e-109 399.1 228 80.3
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.3e-108 396.7 238 73.1
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 3.6e-106 388.7 239 73.6
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.1e-106 387.9 232 73.3
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.0e-105 387.1 209 85.2
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.0e-105 387.1 237 71.3
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 2.0e-101 372.9 249 67.5
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.5e-96 356.7 223 70.4
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.0e-96 356.3 229 67.2
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.3e-95 353.6 241 64.7
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.0e-93 346.3 229 67.2
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 2.7e-93 345.9 224 67.0
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.0e-92 344.0 251 63.3
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 4.2e-91 338.6 230 62.6
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 8.0e-90 334.3 257 63.0
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.6e-82 310.1 180 80.0
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 8.0e-82 307.8 244 61.5
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 9.2e-78 294.3 157 80.3
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.6e-74 282.3 149 81.2
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.0e-60 237.7 177 59.9
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.1e-53 213.4 233 44.6
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.5e-53 212.6 234 47.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.9e-47 193.0 221 49.8
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.2e-40 171.0 96 81.2
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 2.5e-30 136.7 116 57.8
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 3.2e-30 136.3 107 60.7
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.8e-26 123.2 143 46.9
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 2.7e-13 80.1 64 59.4
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 6.1e-13 79.0 51 56.9


User provided reference genes

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