Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 2.3e-130 469.2 279 100.0
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 6.0e-91 338.2 300 63.7
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 8.2e-88 327.8 279 69.9
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 3.1e-87 325.9 291 66.0
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 7.4e-81 304.7 279 61.3
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 6.1e-75 285.0 245 65.7
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 7.4e-65 251.5 276 54.3
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 9.7e-65 251.1 277 54.5
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 1.6e-62 243.8 243 53.9
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 9.1e-55 218.0 253 51.4
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 2.0e-54 216.9 248 54.0
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 1.1e-52 211.1 242 50.8
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 1.9e-52 210.3 242 53.7
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 4.2e-52 209.1 242 52.5
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 2.3e-50 203.4 242 46.7
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 2.6e-49 199.9 243 50.2
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 5.7e-49 198.7 242 46.3
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 1.7e-48 197.2 242 46.3
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 2.2e-48 196.8 248 46.8
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 2.8e-48 196.4 257 46.7
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 4.8e-48 195.7 241 47.3
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 3.1e-47 193.0 249 49.8
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 4.1e-47 192.6 240 46.7
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 4.1e-47 192.6 240 47.1
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 7.0e-47 191.8 243 50.2
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.6e-46 190.7 242 46.7
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.0e-46 190.3 242 43.8
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 2.7e-46 189.9 250 43.2
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.7e-46 189.9 250 43.2
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 3.5e-46 189.5 242 47.1
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 3.5e-46 189.5 242 46.3
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 5.9e-46 188.7 242 44.2
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 7.7e-46 188.3 242 46.3
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 7.7e-46 188.3 248 46.8
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 2.3e-45 186.8 231 47.2
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 3.8e-45 186.0 242 44.2
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 5.0e-45 185.7 242 43.4
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 4.2e-44 182.6 240 47.1
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 2.1e-43 180.3 160 56.2
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 6.1e-43 178.7 242 45.0
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 1.0e-42 177.9 242 39.7
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 3.0e-42 176.4 241 49.0
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 8.8e-42 174.9 249 43.8
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 2.0e-41 173.7 174 55.7
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 2.0e-41 173.7 242 40.5
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 2.6e-41 173.3 242 42.1
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 3.4e-41 172.9 245 42.9
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 3.4e-41 172.9 243 44.9
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 6.3e-40 168.7 240 42.5
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 8.6e-37 158.3 230 42.6
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 1.6e-35 154.1 172 50.0
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 8.0e-35 151.8 246 40.2
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 5.7e-33 145.6 243 35.8
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 7.5e-33 145.2 159 46.5
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 7.5e-33 145.2 244 36.5
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 9.8e-33 144.8 244 36.5
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 1.3e-32 144.4 172 48.8
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.7e-32 142.9 244 36.5
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 8.3e-32 141.7 241 39.0
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 8.3e-32 141.7 242 36.4
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 1.4e-31 141.0 265 35.5
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 9.2e-31 138.3 151 47.0
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 2.7e-30 136.7 237 35.9
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 1.7e-29 134.0 168 42.9
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 3.0e-29 133.3 239 43.1
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 1.1e-28 131.3 240 38.3
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 1.5e-28 131.0 242 34.7
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 4.3e-28 129.4 241 31.5
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 4.3e-28 129.4 233 36.9
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 7.3e-28 128.6 160 43.1
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.6e-27 127.5 176 42.6
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 3.6e-27 126.3 232 36.2
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 4.7e-27 125.9 174 39.1
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 8.9e-26 121.7 242 32.6
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 5.8e-25 119.0 241 34.9
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 7.5e-25 118.6 150 42.0
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 7.5e-25 118.6 246 33.7
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 1.3e-24 117.9 165 41.2
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.1e-23 114.8 229 34.5
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 1.9e-23 114.0 174 36.2
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 2.0e-22 110.5 194 35.6
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.7e-21 107.5 177 40.1
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 5.0e-21 105.9 233 33.5
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.1e-20 104.8 172 35.5
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 1.2e-17 94.7 133 39.1
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 2.4e-15 87.0 75 53.3
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 4.1e-15 86.3 139 39.6
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 2.7e-14 83.6 249 33.3
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.5e-14 83.2 251 30.3
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 6.6e-13 79.0 181 32.0
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 6.6e-13 79.0 236 29.7
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 1.5e-12 77.8 246 31.3
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 2.5e-12 77.0 251 31.1
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 7.3e-12 75.5 242 29.3
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 1.6e-11 74.3 243 28.8
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.1e-11 73.9 103 39.8
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 3.6e-11 73.2 246 30.5
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 1.8e-10 70.9 243 29.6
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 1.8e-10 70.9 243 29.6
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 2.4e-10 70.5 172 30.2
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 5.2e-10 69.3 242 26.0
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 5.2e-10 69.3 242 26.0
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 6.8e-10 68.9 242 26.0
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 3.4e-09 66.6 195 31.8
Lalb_Chr01g0013111 Lupinus albus HOM05D007633 ORTHO05D008817 3.8e-08 63.2 65 58.5
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 1.1e-07 61.6 155 30.3
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 1.4e-07 61.2 191 27.7
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.4e-07 60.5 100 36.0
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 3.2e-07 60.1 72 50.0
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 2.7e-06 57.0 79 41.8
MD13G1194800 Malus domestica HOM05D007633 ORTHO05D008817 3.5e-06 56.6 72 45.8
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 4.6e-06 56.2 52 53.8


User provided reference genes

Program Settings