Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 4.9e-202 707.6 361 100.0
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 9.6e-174 613.6 363 87.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.7e-170 602.8 361 85.3
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 3.9e-167 591.7 365 83.8
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 4.2e-161 571.6 361 82.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.9e-159 565.1 361 80.9
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.7e-154 549.7 332 83.1
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.9e-145 519.6 362 74.3
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 6.1e-144 514.6 361 71.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 4.4e-142 508.4 360 71.7
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.4e-142 508.4 360 71.7
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 9.7e-142 507.3 329 76.3
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 4.8e-141 505.0 362 71.5
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 8.2e-141 504.2 359 70.8
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.4e-140 502.7 360 71.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 7.0e-140 501.1 360 70.8
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-139 500.0 360 71.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.0e-139 499.6 361 71.2
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 2.0e-139 499.6 332 75.3
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.7e-138 496.5 332 75.0
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 6.5e-138 494.6 360 71.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.5e-137 492.7 333 74.5
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.6e-136 490.0 333 73.6
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.1e-136 489.6 332 74.1
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.3e-135 486.1 332 73.2
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 6.8e-135 484.6 343 70.6
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 5.7e-134 481.5 346 73.1
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.7e-133 479.9 362 67.4
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.8e-133 479.2 331 72.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 6.3e-133 478.0 362 66.9
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 8.3e-133 477.6 362 67.1
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.1e-132 477.2 362 69.9
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.8e-132 476.5 383 66.3
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.4e-132 476.1 359 70.5
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.1e-132 475.7 362 66.9
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.1e-132 475.7 362 66.9
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 4.1e-132 475.3 362 66.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 4.1e-132 475.3 360 68.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 7.0e-132 474.6 362 67.1
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.2e-131 473.8 364 64.6
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.7e-131 472.6 366 66.1
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 4.5e-131 471.9 362 66.9
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 4.5e-131 471.9 362 66.6
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 5.9e-131 471.5 344 70.3
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 1.0e-130 470.7 334 69.5
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.0e-130 470.7 332 71.7
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.3e-130 470.3 362 66.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.3e-130 470.3 362 66.3
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.7e-130 469.9 346 69.7
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.7e-130 469.9 360 67.5
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 3.8e-130 468.8 362 66.9
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 5.0e-130 468.4 362 66.9
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 5.0e-130 468.4 362 66.6
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.1e-129 467.2 362 66.3
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.5e-129 466.1 360 66.9
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.5e-129 466.1 362 66.0
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.2e-129 465.7 367 64.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 2.7e-128 462.6 381 64.0
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 6.1e-128 461.5 362 65.7
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.0e-127 460.7 345 68.1
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.3e-127 459.5 359 66.3
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 3.0e-127 459.1 362 65.2
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 4.0e-127 458.8 362 66.0
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 8.8e-127 457.6 364 64.6
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.5e-126 456.8 362 64.9
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 3.4e-126 455.7 363 64.2
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 7.5e-126 454.5 345 67.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 2.8e-125 452.6 264 89.8
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 4.9e-125 451.8 361 63.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.1e-124 448.7 349 65.9
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 8.6e-122 441.0 282 78.0
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.5e-121 440.3 415 58.1
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.5e-121 439.5 363 62.5
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 4.3e-121 438.7 359 61.0
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.6e-118 429.5 360 63.6
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 7.5e-118 427.9 364 63.7
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.8e-118 427.6 349 62.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 9.8e-118 427.6 299 70.2
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 6.4e-117 424.9 304 72.4
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 8.3e-117 424.5 362 63.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 9.2e-116 421.0 436 56.2
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.3e-114 417.2 316 65.8
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.7e-114 416.8 342 60.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.7e-109 400.2 311 64.3
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.7e-109 399.1 264 74.2
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.3e-106 390.6 300 65.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 7.3e-105 384.8 321 62.3
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.4e-102 375.9 265 74.3
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 7.5e-102 374.8 330 56.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 4.9e-101 372.1 264 73.1
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 4.9e-101 372.1 264 74.2
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.4e-100 370.5 359 56.5
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.4e-100 370.5 265 71.7
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.9e-100 370.2 348 55.5
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 5.4e-100 368.6 338 55.9
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.1e-97 360.9 271 69.4
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.5e-97 360.5 233 78.5
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 3.8e-93 345.9 264 67.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.0e-90 337.8 289 59.5
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.1e-89 334.3 247 69.6
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.6e-88 330.5 264 65.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 2.0e-86 323.6 386 47.2
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.3e-82 310.1 205 77.1
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 3.4e-78 296.2 311 51.1
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 7.9e-75 285.0 357 44.5
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.8e-72 276.6 186 75.8
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 5.1e-66 255.8 343 44.0
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.5e-60 236.9 186 63.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.0e-54 217.2 436 34.9
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.6e-51 206.1 219 52.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 3.7e-48 196.4 374 36.4
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.7e-48 196.4 217 50.2
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.0e-38 164.1 157 58.0
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.0e-37 161.8 146 61.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-35 154.8 140 60.7
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 5.2e-34 149.4 311 31.2
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.1e-33 148.3 145 51.7
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-30 138.3 135 56.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.1e-27 127.5 118 52.5
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.2e-25 121.7 96 62.5
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.2e-24 117.5 75 73.3
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.4e-23 114.0 73 72.6
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.5e-22 110.2 107 59.8
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.7e-21 107.8 79 67.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 3.8e-21 106.7 227 31.7
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.9e-20 104.4 77 68.8
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.7e-13 81.3 92 52.2
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 2.2e-08 64.3 127 29.9
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 3.1e-07 60.5 179 29.1
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 7.0e-07 59.3 127 29.1
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 1.6e-06 58.2 176 24.4
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 2.0e-06 57.8 176 23.9
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 3.5e-06 57.0 74 40.5
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 3.5e-06 57.0 120 29.2
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 4.5e-06 56.6 110 30.9
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 5.9e-06 56.2 127 33.1
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 7.8e-06 55.8 150 24.7
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.8e-06 55.8 120 30.0
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 7.8e-06 55.8 120 29.2


User provided reference genes

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