Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24235_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 3.7e-125 451.4 208 100.0
Ca_14473_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 6.3e-85 317.8 160 88.8
Ca_07377_v3 Cicer arietinum L. HOM05D000176 ORTHO05D012663 1.2e-75 287.0 160 76.9
Ca_02859_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 1.0e-74 283.9 145 87.6
Ca_18963_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 2.2e-74 282.7 159 76.7
Ca_20786_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 3.4e-46 189.1 99 86.9
Ca_31085_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 5.8e-38 161.8 160 53.8
Ca_14622_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 1.4e-36 157.1 160 52.5
Ca_22803_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 7.6e-30 134.8 113 59.3
Lalb_Chr01g0019781 Lupinus albus HOM05D000176 ORTHO05D000106 1.7e-29 133.7 143 42.7
Ca_14575_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 5.1e-26 122.1 60 90.0
Ca_05186_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 9.0e-23 111.3 56 85.7
Ca_30979_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 9.0e-23 111.3 56 85.7
Lj4g0008099 Lotus japonicus HOM05D000176 ORTHO05D000106 1.1e-15 87.8 169 32.5
TPR.G15356 Trifolium pratense HOM05D000176 ORTHO05D000106 5.8e-14 82.0 136 34.6
Ca_26086_v3 Cicer arietinum L. HOM05D010640 ORTHO05D012663 3.8e-13 79.3 37 91.9
Rhsim10G0079000 Rhododendron simsii HOM05D000176 ORTHO05D003511 6.4e-13 78.6 183 27.9
Lj1g0006892 Lotus japonicus HOM05D000176 ORTHO05D000106 8.4e-13 78.2 115 32.2
Lalb_Chr06g0165921 Lupinus albus HOM05D000176 ORTHO05D000106 8.4e-13 78.2 71 45.1
Cc01_g16020 Coffea canephora HOM05D000176 ORTHO05D000106 1.9e-12 77.0 161 31.7
Lj1g0015263 Lotus japonicus HOM05D000176 ORTHO05D000106 1.9e-12 77.0 160 29.4
QL01p018788 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-12 77.0 174 30.5
Lalb_Chr01g0015401 Lupinus albus HOM05D000176 ORTHO05D000106 5.4e-12 75.5 169 30.8
TWI31G0542 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 5.4e-12 75.5 178 27.0
TWI75G1856 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 7.1e-12 75.1 178 27.0
arahy.Tifrunner.gnm1.ann1.LPR03G Arachis hypogaea HOM05D000176 ORTHO05D000106 1.6e-11 73.9 168 33.3
Rhsim01G0238100 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.6e-11 73.9 164 31.7
Rhsim06G0170700 Rhododendron simsii HOM05D000176 ORTHO05D000106 2.1e-11 73.6 164 31.7
QL04p066053 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-11 73.2 164 29.3
QL05p078397 Quercus lobata HOM05D000070 ORTHO05D000106 2.7e-11 73.2 164 29.3
QL12p031843 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-11 73.2 164 29.3
QL93p0164_0014 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-11 73.2 164 29.3
QL93p2017_0003 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-11 73.2 164 29.3
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 3.5e-11 72.8 174 28.2
TWI75G0639 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 3.5e-11 72.8 159 31.4
arahy.Tifrunner.gnm1.ann1.80HB5U Arachis hypogaea HOM05D000176 ORTHO05D000106 4.6e-11 72.4 162 32.7
QL01p023632 Quercus lobata HOM05D000176 ORTHO05D000106 4.6e-11 72.4 164 29.3
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 6.0e-11 72.0 180 27.2
TWI38G1670 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.0e-11 72.0 173 27.7
arahy.Tifrunner.gnm1.ann1.918IDM Arachis hypogaea HOM05D000176 ORTHO05D000106 7.9e-11 71.6 165 27.3
QL03p000009 Quercus lobata HOM05D000176 ORTHO05D000106 7.9e-11 71.6 176 29.0
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 7.9e-11 71.6 164 28.7
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 7.9e-11 71.6 180 27.2
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 7.9e-11 71.6 180 27.2
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.0e-10 71.2 180 27.2
QL09p008289 Quercus lobata HOM05D001043 ORTHO05D000106 1.0e-10 71.2 164 28.7
arahy.Tifrunner.gnm1.ann1.I3FH3V Arachis hypogaea HOM05D000176 ORTHO05D000106 1.3e-10 70.9 165 27.3
arahy.Tifrunner.gnm1.ann1.N6NQQH Arachis hypogaea HOM05D000176 ORTHO05D000106 1.3e-10 70.9 165 26.7
MELO3C022946.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.3e-10 70.9 115 32.2
AL1G54690 Arabidopsis lyrata HOM05D000176 ORTHO05D003511 1.8e-10 70.5 173 27.7
Nitab4.5_0003663g0020 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.8e-10 70.5 180 27.2
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 1.8e-10 70.5 162 29.0
QL12p023375 Quercus lobata HOM05D000176 ORTHO05D000106 1.8e-10 70.5 162 29.0
Cc00_g20850 Coffea canephora HOM05D000176 ORTHO05D000106 2.3e-10 70.1 166 26.5
MELO3C033541.2 Cucumis melo HOM05D000176 ORTHO05D000106 2.3e-10 70.1 165 26.1
Cc08_g06590 Coffea canephora HOM05D000176 ORTHO05D000106 3.0e-10 69.7 166 26.5
CsaV3_5G039840 Cucumis sativus L. HOM05D000176 ORTHO05D000106 3.0e-10 69.7 158 29.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.0e-10 69.7 164 28.7
QL05p061244 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-10 69.7 176 29.0
QL10p058474 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-10 69.7 176 29.0
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 3.9e-10 69.3 171 26.3
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-10 69.3 164 28.7
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-10 68.9 166 29.5
Sp1g35090 Schrenkiella parvula HOM05D000176 ORTHO05D003511 5.1e-10 68.9 173 27.2
TWI79G1140 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 5.1e-10 68.9 176 27.3
Ca_11236_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 8.7e-10 68.2 60 46.7
Ca_27870_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.1e-09 67.8 60 46.7
CsaV3_5G015580 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.1e-09 67.8 115 31.3
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 1.1e-09 67.8 168 26.2
QL02p053683 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-09 67.8 167 29.3
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-09 67.8 174 29.9
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 1.1e-09 67.8 174 29.9
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.9e-09 67.0 149 30.2
QL11p007847 Quercus lobata HOM05D002083 ORTHO05D000332 1.9e-09 67.0 176 29.0
RhsimUnG0046100 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.9e-09 67.0 173 28.9
Carub.0001s3722 Capsella rubella HOM05D000176 ORTHO05D003511 2.5e-09 66.6 171 28.1
Cc00_g31110 Coffea canephora HOM05D000176 ORTHO05D000106 2.5e-09 66.6 162 29.6
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.5e-09 66.6 166 28.9
QL08p003473 Quercus lobata HOM05D000176 ORTHO05D005465 2.5e-09 66.6 165 27.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-09 66.6 166 29.5
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-09 66.6 166 28.9
arahy.Tifrunner.gnm1.ann1.IBS02P Arachis hypogaea HOM05D000176 ORTHO05D000106 3.3e-09 66.2 168 32.7
arahy.Tifrunner.gnm1.ann1.Q3N11L Arachis hypogaea HOM05D000176 ORTHO05D000106 3.3e-09 66.2 168 31.5
ClCG06G006800 Citrullus lanatus HOM05D000176 ORTHO05D000013 3.3e-09 66.2 147 32.7
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.3e-09 66.2 164 26.8
Lalb_Chr05g0223151 Lupinus albus HOM05D010640 ORTHO05D012663 4.3e-09 65.9 60 46.7
TWI31G0719 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.3e-09 65.9 178 27.5
MSTRG.13026 Avicennia marina HOM05D000176 ORTHO05D000106 5.6e-09 65.5 170 30.0
PGSC0003DMG400034839 Solanum tuberosum HOM05D000176 ORTHO05D000106 5.6e-09 65.5 160 29.4
AT1G48120 Arabidopsis thaliana HOM05D000176 ORTHO05D003511 7.4e-09 65.1 171 26.9
arahy.Tifrunner.gnm1.ann1.X7AT2Z Arachis hypogaea HOM05D000176 ORTHO05D000106 7.4e-09 65.1 158 25.9
A06p04680 Brassica napus HOM05D000176 ORTHO05D003511 7.4e-09 65.1 172 27.3
C06p02530 Brassica napus HOM05D000176 ORTHO05D003511 7.4e-09 65.1 172 27.3
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 7.4e-09 65.1 172 27.3
BraA06t23671Z Brassica rapa HOM05D000176 ORTHO05D003511 7.4e-09 65.1 172 27.3
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 7.4e-09 65.1 172 26.7
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 7.4e-09 65.1 180 26.7
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 7.4e-09 65.1 180 26.7
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 7.4e-09 65.1 165 27.9
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 9.6e-09 64.7 181 27.6
Cc08_g06400 Coffea canephora HOM05D000176 ORTHO05D000106 9.6e-09 64.7 162 27.8
arahy.Tifrunner.gnm1.ann1.MAV7QP Arachis hypogaea HOM05D000176 ORTHO05D000106 1.3e-08 64.3 164 26.2
DCAR_030358 Daucus carota HOM05D000176 ORTHO05D000106 1.6e-08 63.9 185 25.4
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.6e-08 63.9 168 27.4
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.1e-08 63.5 94 35.1
arahy.Tifrunner.gnm1.ann1.6CLA8Q Arachis hypogaea HOM05D000176 ORTHO05D000106 3.7e-08 62.8 161 26.1
MELO3C027159.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.7e-08 62.8 162 26.5
Cc03_g15850 Coffea canephora HOM05D000176 ORTHO05D000106 4.8e-08 62.4 129 27.1
Ca_14872_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 8.1e-08 61.6 73 42.5
Migut.M01636 Erythranthe guttata HOM05D000176 ORTHO05D000106 8.1e-08 61.6 172 27.9
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 1.1e-07 61.2 158 26.6
QL10p044969 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-07 61.2 151 29.8
arahy.Tifrunner.gnm1.ann1.8ZN2K0 Arachis hypogaea HOM05D000176 ORTHO05D000106 1.4e-07 60.8 153 28.1
arahy.Tifrunner.gnm1.ann1.XY70LV Arachis hypogaea HOM05D000176 ORTHO05D000106 1.4e-07 60.8 169 27.8
Lalb_Chr03g0034341 Lupinus albus HOM05D000176 ORTHO05D000106 1.4e-07 60.8 61 39.3
Rhsim09G0099200 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.8e-07 60.5 164 28.7
arahy.Tifrunner.gnm1.ann1.4GMU31 Arachis hypogaea HOM05D030046 ORTHO05D023755 2.4e-07 60.1 95 37.9
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.4e-07 60.1 190 27.4
ECA248G1455 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.4e-07 60.1 178 31.5
Lj2g0026406 Lotus japonicus HOM05D000176 ORTHO05D000106 2.4e-07 60.1 112 31.2
QL01p028314 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-07 60.1 145 29.7
CsaV3_1G024380 Cucumis sativus L. HOM05D000176 ORTHO05D000106 3.1e-07 59.7 117 27.4
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 3.1e-07 59.7 116 31.0
arahy.Tifrunner.gnm1.ann1.5HKJ6P Arachis hypogaea HOM05D000176 ORTHO05D000106 4.0e-07 59.3 143 30.1
Cc05_g12610 Coffea canephora HOM05D000176 ORTHO05D000106 4.0e-07 59.3 179 25.1
CsaV3_6G016110 Cucumis sativus L. HOM05D000176 ORTHO05D000106 4.0e-07 59.3 116 27.6
DCAR_028487 Daucus carota HOM05D011721 ORTHO05D013592 4.0e-07 59.3 110 36.4
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 5.3e-07 58.9 168 26.8
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.3e-07 58.9 190 27.4
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.3e-07 58.9 190 27.4
Cc03_g09280 Coffea canephora HOM05D000176 ORTHO05D000106 5.3e-07 58.9 169 23.1
SHI45281 Sapria himalayana HOM05D000176 ORTHO05D000106 5.3e-07 58.9 136 29.4
DCAR_023735 Daucus carota HOM05D011721 ORTHO05D013592 9.0e-07 58.2 110 36.4
CSS0028824 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.2e-06 57.8 173 28.3
ECA236G0891 Erigeron canadensis HOM05D000176 ORTHO05D000106 1.2e-06 57.8 178 31.5
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-06 57.8 155 29.0
arahy.Tifrunner.gnm1.ann1.ZE2QYT Arachis hypogaea HOM05D000176 ORTHO05D000106 1.5e-06 57.4 169 25.4
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-06 57.4 190 26.8
ECA240G0173 Erigeron canadensis HOM05D000176 ORTHO05D000106 1.5e-06 57.4 178 31.5
ECA238G2664 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.0e-06 57.0 178 31.5
QL04p053141 Quercus lobata HOM05D000176 ORTHO05D000106 2.0e-06 57.0 103 31.1
QL06p040368 Quercus lobata HOM05D000176 ORTHO05D000106 2.0e-06 57.0 103 31.1
ECA233G3601 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.6e-06 56.6 178 31.5
ECA233G5143 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.6e-06 56.6 178 31.5
ECA236G4963 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.6e-06 56.6 162 30.9
ECA248G2618 Erigeron canadensis HOM05D000006 ORTHO05D000106 2.6e-06 56.6 178 31.5
QL02p103239 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-06 56.6 101 31.7
DCAR_031495 Daucus carota HOM05D011721 ORTHO05D013592 3.4e-06 56.2 110 35.5
ECA234G4379 Erigeron canadensis HOM05D000176 ORTHO05D000106 3.4e-06 56.2 172 31.4
ECA234G3717 Erigeron canadensis HOM05D000176 ORTHO05D000106 4.5e-06 55.8 178 30.9
Cc00_g03290 Coffea canephora HOM05D000176 ORTHO05D000106 5.8e-06 55.5 111 30.6
ECA232G4153 Erigeron canadensis HOM05D000176 ORTHO05D000106 5.8e-06 55.5 184 31.0
ECA233G2153 Erigeron canadensis HOM05D000176 ORTHO05D000106 5.8e-06 55.5 178 31.5
QL03p015444 Quercus lobata HOM05D000176 ORTHO05D000106 9.9e-06 54.7 96 32.3
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 9.9e-06 54.7 89 34.8


User provided reference genes

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