Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 4.6e-76 287.7 138 100.0
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.2e-63 246.5 154 78.6
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 5.9e-63 244.2 154 77.9
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 3.3e-58 228.4 155 74.8
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 4.4e-58 228.0 154 74.7
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.7e-57 224.9 154 74.0
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 6.3e-57 224.2 155 74.2
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 3.6e-52 208.4 159 68.6
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 6.7e-51 204.1 158 67.7
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 7.4e-50 200.7 158 66.5
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.2e-49 199.1 158 64.6
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 2.8e-49 198.7 140 70.0
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 2.8e-49 198.7 155 67.7
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 9.1e-48 193.7 162 63.0
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.2e-44 183.3 177 57.6
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.0e-43 180.3 156 64.7
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 3.4e-42 175.3 160 59.4
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 9.8e-42 173.7 160 58.1
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.2e-41 172.6 159 56.6
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.1e-40 170.2 156 56.4
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 7.0e-40 167.5 146 58.9
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 9.1e-40 167.2 164 57.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.2e-39 166.8 154 57.1
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 3.5e-39 165.2 143 58.0
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 7.7e-39 164.1 154 55.8
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 7.7e-39 164.1 164 54.9
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 3.8e-38 161.8 160 56.2
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 5.0e-38 161.4 157 56.1
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 6.5e-38 161.0 154 57.1
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 6.5e-38 161.0 157 57.3
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 8.5e-38 160.6 156 57.1
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-37 160.2 162 53.7
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.5e-37 159.8 160 54.4
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 1.5e-37 159.8 158 56.3
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.5e-37 159.1 156 54.5
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.5e-37 159.1 159 54.7
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 2.5e-37 159.1 160 53.8
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 4.2e-37 158.3 156 55.8
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.2e-37 158.3 156 54.5
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 5.5e-37 157.9 156 53.8
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 5.5e-37 157.9 159 52.2
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 5.5e-37 157.9 157 54.8
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 7.2e-37 157.5 158 54.4
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 9.4e-37 157.1 163 53.4
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 9.4e-37 157.1 95 80.0
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.2e-36 156.8 151 55.0
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.6e-36 156.4 156 55.8
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.1e-36 156.0 162 54.9
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.7e-36 155.6 154 53.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.6e-36 155.2 156 55.1
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.0e-35 153.7 158 51.9
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.8e-35 152.9 159 53.5
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.0e-35 152.1 156 52.6
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.0e-35 152.1 156 53.2
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.0e-35 152.1 156 53.2
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.0e-35 151.8 164 52.4
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 5.2e-35 151.4 162 53.1
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 6.8e-35 151.0 169 49.1
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.2e-34 150.2 231 40.3
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.5e-34 149.8 175 48.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 3.4e-34 148.7 164 51.8
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 4.4e-34 148.3 164 50.0
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.3e-33 146.7 166 50.6
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.7e-33 146.4 159 50.9
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 4.9e-33 144.8 167 50.9
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.8e-32 142.9 160 49.4
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 1.8e-32 142.9 164 50.0
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.1e-32 142.1 156 46.2
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 5.4e-32 141.4 180 48.9
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 5.4e-32 141.4 155 49.7
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 5.4e-32 141.4 98 68.4
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 7.0e-32 141.0 154 49.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 7.0e-32 141.0 155 49.7
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 9.1e-32 140.6 151 51.7
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 9.1e-32 140.6 160 49.4
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.5e-31 138.7 151 51.0
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 7.7e-31 137.5 158 50.0
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.3e-30 136.7 161 46.6
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.7e-30 136.3 158 48.1
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 2.3e-30 136.0 157 49.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 6.6e-30 134.4 91 72.5
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 8.6e-30 134.0 90 73.3
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.1e-29 133.7 192 43.8
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.1e-29 133.7 192 43.8
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 5.5e-29 131.3 154 50.0
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.5e-29 131.3 163 45.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 7.2e-29 131.0 88 70.5
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 9.5e-29 130.6 163 45.4
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 3.6e-28 128.6 87 71.3
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.8e-27 126.3 224 38.4
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.3e-27 125.9 112 58.9
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 3.0e-27 125.6 87 71.3
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.0e-27 125.6 88 68.2
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.0e-27 125.2 140 50.7
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 5.2e-27 124.8 154 45.5
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 6.8e-27 124.4 158 45.6
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 3.4e-26 122.1 144 45.8
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.4e-26 122.1 163 46.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 2.2e-25 119.4 164 45.7
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 2.9e-25 119.0 194 38.1
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 4.9e-25 118.2 90 61.1
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 6.3e-25 117.9 89 60.7
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.1e-24 117.1 138 43.5
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.1e-24 117.1 94 64.9
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 2.7e-23 112.5 84 61.9
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 4.6e-23 111.7 137 47.4
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 3.9e-22 108.6 126 45.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.9e-21 106.3 47 100.0
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 3.3e-21 105.5 103 51.5
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 4.7e-20 101.7 88 61.4
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 1.8e-19 99.8 128 47.7
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.3e-19 99.4 93 51.6
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 4.0e-19 98.6 156 41.0
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 6.8e-19 97.8 45 93.3
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.6e-18 95.9 216 34.3
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.7e-17 93.2 83 49.4
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 1.9e-16 89.7 137 41.6
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 9.2e-16 87.4 83 48.2
Medtr8g045467 Medicago truncatula HOM05D005520 ORTHO05D006633 2.7e-15 85.9 65 67.7
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 6.0e-15 84.7 102 42.2
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.0e-14 82.4 179 31.3
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 6.6e-14 81.3 80 48.8
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.6e-12 75.5 48 70.8
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.8e-11 73.2 79 44.3
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 3.1e-11 72.4 107 34.6
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.2e-10 70.5 78 42.3
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 4.4e-10 68.6 84 34.5
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 4.4e-10 68.6 96 41.7
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 2.9e-09 65.9 91 41.8
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 4.9e-09 65.1 83 43.4
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.1e-08 63.9 82 39.0
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 6.0e-07 58.2 142 32.4
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.0e-06 57.4 98 34.7
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 3.9e-06 55.5 25 92.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 5.1e-06 55.1 26 88.5
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 6.6e-06 54.7 52 57.7


User provided reference genes

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