Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.8e-210 735.7 386 100.0
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.1e-158 562.8 367 80.4
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.0e-153 546.2 369 78.3
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.0e-137 493.0 370 71.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.5e-136 488.0 371 70.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 9.4e-135 484.2 371 70.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 3.7e-131 472.2 367 70.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 8.3e-131 471.1 371 68.7
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.8e-123 446.0 369 64.5
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 8.3e-115 417.9 374 60.2
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 6.0e-105 385.2 374 58.6
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.5e-103 380.6 374 58.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.3e-103 379.4 374 58.6
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 6.2e-102 375.2 374 58.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 5.2e-101 372.1 245 78.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.3e-99 367.5 371 56.3
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.6e-97 360.5 373 57.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.1e-97 360.1 378 56.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.7e-96 357.1 369 55.8
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.3e-95 351.7 371 56.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.8e-94 349.7 372 55.1
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 4.7e-94 349.0 372 56.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 6.2e-94 348.6 373 55.0
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 5.2e-93 345.5 373 56.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 5.2e-93 345.5 373 55.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.2e-92 344.4 370 54.9
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.5e-92 344.0 374 54.8
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.0e-92 343.6 369 56.4
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 4.4e-92 342.4 373 55.2
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.3e-91 340.9 372 54.3
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.2e-91 340.1 374 56.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.9e-91 339.0 371 55.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 9.2e-90 334.7 371 55.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.2e-89 334.3 373 55.5
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.1e-89 333.6 371 54.4
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.3e-88 330.9 376 53.5
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.9e-88 329.3 372 53.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.9e-88 329.3 372 53.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.9e-88 329.3 374 53.7
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.9e-87 327.0 374 53.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.5e-87 326.6 387 52.7
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.5e-87 326.6 386 51.0
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.6e-86 323.9 374 55.1
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-86 323.2 374 52.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-86 323.2 374 53.2
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.2e-86 322.0 374 52.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.1e-85 321.2 387 52.2
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.4e-85 320.1 374 52.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.2e-85 318.9 373 52.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 6.9e-85 318.5 378 52.4
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 9.0e-85 318.2 371 52.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.6e-84 316.6 378 52.4
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.8e-84 315.5 369 52.6
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.9e-82 310.5 374 52.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.9e-82 310.5 377 50.1
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 4.2e-82 309.3 381 52.0
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 9.3e-82 308.1 373 51.2
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.0e-80 304.7 370 51.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 4.3e-79 299.3 389 49.1
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.8e-78 296.6 384 49.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 8.1e-78 295.0 377 50.4
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.8e-77 293.9 379 48.3
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.4e-77 293.5 384 50.0
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.9e-75 286.6 382 49.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.1e-74 284.6 370 46.5
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.9e-74 283.9 372 48.4
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.2e-74 283.1 370 49.2
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.2e-74 282.7 370 49.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 9.3e-74 281.6 381 47.2
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.5e-73 279.6 372 49.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.0e-73 278.9 371 49.1
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 7.9e-73 278.5 377 49.6
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.0e-72 278.1 389 46.8
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 5.1e-72 275.8 384 47.4
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.4e-71 271.9 386 46.6
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.3e-70 271.2 370 47.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.2e-70 268.9 386 43.5
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.4e-69 266.9 380 46.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.4e-69 266.9 382 46.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 5.3e-69 265.8 363 44.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.2e-68 264.6 375 46.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.5e-68 264.2 381 46.7
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-68 264.2 315 51.4
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.6e-68 263.5 381 46.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.6e-68 263.5 375 44.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.8e-68 262.3 377 47.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 9.9e-68 261.5 373 42.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.9e-67 260.0 384 44.8
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.9e-67 260.0 385 43.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 4.9e-67 259.2 361 44.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.9e-67 259.2 380 43.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.1e-66 258.1 374 43.6
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.1e-66 258.1 374 43.3
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-66 258.1 280 52.9
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.1e-65 253.8 369 46.6
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.1e-65 253.8 378 44.2
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.0e-65 252.3 387 44.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.9e-65 251.9 376 43.9
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.0e-64 251.5 387 44.2
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.8e-64 250.8 390 44.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.8e-64 250.8 395 42.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.3e-64 250.4 372 44.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.0e-64 250.0 391 43.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 3.0e-64 250.0 388 44.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.9e-64 249.6 359 44.8
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.1e-64 249.2 389 44.2
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.5e-63 247.7 383 44.1
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 4.3e-63 246.1 373 41.8
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 4.3e-63 246.1 388 44.6
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.3e-62 244.6 375 42.1
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-62 244.6 359 44.0
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.1e-62 243.8 378 42.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.2e-62 242.3 387 43.7
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 6.2e-62 242.3 375 42.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.2e-62 241.9 374 42.2
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.8e-61 240.7 374 44.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.4e-61 240.4 384 42.4
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 5.3e-61 239.2 375 42.1
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 6.9e-61 238.8 380 44.5
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.7e-59 234.2 384 41.1
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.9e-59 232.6 384 41.9
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 4.9e-59 232.6 314 47.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-58 231.5 385 43.4
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.2e-58 229.6 385 42.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 9.3e-58 228.4 389 39.8
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 9.3e-58 228.4 376 41.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.1e-56 222.6 268 46.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.9e-55 220.7 388 38.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.3e-55 219.9 363 41.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.3e-54 218.0 404 34.9
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.7e-54 216.5 353 41.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.4e-53 214.5 269 47.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 4.1e-53 213.0 209 53.6
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.9e-53 212.2 267 45.3
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.4e-52 209.9 193 59.1
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.3e-51 208.0 275 42.5
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.9e-51 206.8 381 39.9
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 6.5e-51 205.7 373 39.7
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.0e-48 198.4 300 39.3
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 5.1e-48 196.1 322 42.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.3e-45 186.0 354 39.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.9e-45 185.7 306 44.1
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 7.7e-44 182.2 266 40.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.2e-42 175.6 216 44.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.1e-40 169.5 207 46.9
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.5e-39 167.9 306 35.6
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.7e-39 166.0 218 42.2
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.2e-38 164.1 218 42.2
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.3e-35 154.8 348 34.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-34 151.4 278 37.1
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 9.4e-34 148.7 110 65.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.0e-33 145.6 312 32.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 6.7e-32 142.5 149 52.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-31 141.0 199 38.2
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.3e-29 132.9 243 33.7
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.2e-26 123.6 216 36.6
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 9.4e-26 122.1 186 40.3
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 6.1e-25 119.4 98 62.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.0e-24 117.1 115 52.2
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 5.2e-24 116.3 173 45.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.1e-17 94.4 80 55.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.4e-16 91.7 164 39.6
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.3e-16 90.9 107 43.9
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.0e-16 90.5 129 43.4
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 5.4e-13 79.7 161 39.8
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.4e-13 79.7 44 81.8
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 7.0e-13 79.3 116 40.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 3.5e-12 77.0 103 45.6
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.8e-11 73.6 115 38.3
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-10 70.9 40 75.0
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.3e-10 70.5 102 40.2
Medtr4g097690 Medicago truncatula HOM05D003737 ORTHO05D048953 3.6e-09 67.0 38 76.3
Medtr4g097660 Medicago truncatula HOM05D003737 ORTHO05D048953 4.7e-09 66.6 65 49.2
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 6.3e-06 56.2 33 75.8


User provided reference genes

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