Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.3e-211 738.0 349 100.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 4.6e-112 408.7 315 60.6
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 4.6e-112 408.7 344 57.8
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.0e-111 407.5 345 57.1
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.0e-111 407.5 345 57.1
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.0e-111 407.5 315 61.6
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.3e-111 407.1 344 58.4
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.0e-111 406.0 344 57.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 3.9e-111 405.6 345 56.8
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.5e-110 403.7 344 57.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.5e-110 403.7 350 56.3
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 4.3e-110 402.1 344 55.5
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 4.3e-110 402.1 344 56.4
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 5.6e-110 401.7 350 54.9
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 5.6e-110 401.7 315 59.7
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.5e-110 401.0 344 56.4
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.1e-109 399.8 344 57.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.8e-109 399.4 349 54.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.8e-109 399.4 349 55.3
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 3.6e-109 399.1 344 57.0
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.6e-109 399.1 344 57.0
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 8.0e-109 397.9 344 56.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.0e-108 397.5 348 54.9
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-108 397.1 344 56.7
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.8e-108 396.7 348 55.7
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.8e-108 396.7 349 55.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.8e-108 396.7 359 53.2
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.8e-108 396.7 344 54.9
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.3e-108 396.4 347 55.3
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 3.1e-108 396.0 351 55.0
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.2e-108 395.2 339 56.9
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 5.2e-108 395.2 347 55.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 6.8e-108 394.8 348 55.2
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 8.9e-108 394.4 344 55.5
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 8.9e-108 394.4 356 53.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.2e-107 394.0 345 55.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-107 393.7 344 54.9
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.5e-107 393.7 347 54.5
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.0e-107 393.3 349 55.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 3.4e-107 392.5 350 54.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 4.4e-107 392.1 351 55.0
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 5.8e-107 391.7 351 53.6
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.5e-107 391.3 352 54.0
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 7.5e-107 391.3 345 54.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 9.8e-107 391.0 339 56.6
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 9.8e-107 391.0 344 55.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 9.8e-107 391.0 348 54.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 9.8e-107 391.0 351 52.7
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.3e-106 390.6 345 54.8
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.3e-106 390.6 349 55.3
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.7e-106 390.2 345 54.2
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.7e-106 390.2 344 55.8
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.2e-106 389.8 344 56.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.9e-106 389.4 351 54.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.9e-106 389.4 319 58.9
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 2.9e-106 389.4 348 55.2
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 3.7e-106 389.0 351 55.0
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 6.4e-106 388.3 344 53.8
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 8.3e-106 387.9 345 53.9
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.1e-105 387.5 348 54.6
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.9e-105 386.7 344 54.7
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.9e-105 386.7 344 53.8
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.4e-105 386.3 348 54.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 4.1e-105 385.6 344 54.4
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.4e-105 385.2 344 54.7
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 7.0e-105 384.8 344 54.1
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.2e-104 384.0 373 52.5
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.7e-104 382.9 344 53.8
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.5e-104 382.5 344 53.8
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 3.5e-104 382.5 348 53.2
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 4.6e-104 382.1 348 54.6
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.6e-104 382.1 348 54.6
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 4.6e-104 382.1 348 54.6
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 6.0e-104 381.7 348 54.6
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 7.8e-104 381.3 344 54.1
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 7.8e-104 381.3 315 57.1
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 7.8e-104 381.3 354 52.8
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.0e-103 380.9 344 53.8
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.3e-103 380.6 348 54.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.3e-103 379.8 351 53.0
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 3.0e-103 379.4 354 52.0
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 5.0e-103 378.6 353 51.6
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 6.6e-103 378.3 346 53.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 8.6e-103 377.9 376 49.7
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.1e-102 377.5 349 53.0
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 4.3e-102 375.6 355 51.8
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 5.6e-102 375.2 351 52.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 5.6e-102 375.2 344 53.2
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 7.3e-102 374.8 348 52.6
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.1e-101 373.2 352 51.4
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.8e-101 372.9 352 51.1
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.8e-101 372.9 352 51.1
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 4.7e-101 372.1 354 51.1
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.1e-100 369.4 349 52.1
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.5e-99 367.1 316 55.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.2e-98 363.2 314 54.8
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-97 360.5 436 45.0
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 9.2e-97 357.8 343 50.4
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.6e-96 357.1 347 49.9
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 3.5e-96 355.9 403 46.9
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.8e-96 354.8 355 49.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.3e-95 354.0 350 50.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.3e-95 354.0 347 49.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.3e-95 353.2 351 48.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.0e-95 352.8 347 49.0
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 5.1e-95 352.1 351 48.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 5.1e-95 352.1 351 49.0
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-94 350.5 356 48.9
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 5.6e-94 348.6 426 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 5.2e-92 342.0 315 50.8
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-90 337.4 345 49.6
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.4e-89 333.2 261 59.8
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.7e-87 327.0 297 51.9
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.9e-86 323.6 235 62.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.3e-86 322.8 441 39.7
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.2e-85 318.5 305 53.1
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 6.9e-84 315.1 294 53.7
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.6e-83 313.2 329 48.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 7.8e-80 301.6 376 45.2
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.0e-79 301.2 267 56.6
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.6e-77 293.9 274 53.3
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 9.3e-73 278.1 295 46.4
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.2e-66 256.9 236 52.1
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.2e-64 251.1 345 41.2
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 3.5e-56 223.0 167 61.7
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.8e-55 220.7 153 65.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 2.4e-52 210.3 260 43.8
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.8e-50 203.0 148 61.5
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-49 200.7 220 45.5
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.5e-49 200.3 167 55.7
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.9e-47 193.0 194 48.5
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.3e-42 177.9 179 51.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 6.9e-36 155.6 105 64.8
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 6.5e-34 149.1 112 61.6
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 5.7e-30 136.0 177 42.4
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.9e-25 120.9 157 41.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.7e-19 100.5 96 52.1
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.7e-19 100.5 80 57.5
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 8.8e-15 85.5 84 51.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.5e-14 84.7 144 40.3
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.4e-14 83.2 61 57.4
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 7.5e-14 82.4 75 54.7
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.8e-12 77.8 52 65.4
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.4e-12 76.3 53 64.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 5.5e-09 66.2 51 56.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.5e-09 65.5 80 41.2
Duzib168G1195 Durio zibethinus HOM05D000206 ORTHO05D000232 2.0e-06 57.8 133 27.8


User provided reference genes

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