Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 4.8e-117 424.5 211 100.0
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.7e-114 416.0 205 100.0
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 2.8e-109 398.7 211 94.8
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 2.0e-107 392.5 217 90.8
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.1e-104 382.5 211 91.0
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.8e-104 382.1 211 90.5
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 3.6e-104 381.7 211 91.0
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.3e-101 373.2 205 90.7
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.2e-101 372.5 205 90.7
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.2e-101 372.5 205 89.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 3.7e-101 371.7 211 89.1
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 8.3e-101 370.5 205 90.2
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 6.2e-96 354.4 206 85.0
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 5.4e-92 341.3 210 80.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 6.0e-91 337.8 211 80.1
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 3.3e-89 332.0 205 80.5
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 8.3e-85 317.4 211 74.9
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.7e-83 312.4 211 73.9
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.7e-83 312.4 211 73.9
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.7e-83 312.4 211 73.9
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 3.5e-83 312.0 211 74.4
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.8e-83 310.8 211 73.5
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 1.7e-82 309.7 211 73.0
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.7e-82 309.7 211 73.0
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.7e-82 309.7 211 73.0
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.7e-82 309.7 211 73.0
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 5.1e-82 308.1 210 73.3
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 8.6e-82 307.4 215 72.1
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.5e-81 306.6 209 72.2
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.9e-81 306.2 207 73.4
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-81 305.1 207 72.9
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 4.3e-81 305.1 210 71.0
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 9.6e-81 303.9 210 70.5
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-80 303.5 206 73.3
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.2e-80 303.5 209 71.8
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.6e-80 303.1 210 71.4
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.1e-80 302.8 205 70.2
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.1e-80 302.8 209 71.8
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.8e-80 302.4 205 69.8
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 3.6e-80 302.0 209 70.3
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 8.1e-80 300.8 205 71.7
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 3.1e-79 298.9 190 77.4
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 5.2e-79 298.1 210 70.0
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 6.8e-79 297.7 208 70.2
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.6e-78 295.8 211 70.1
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 5.8e-78 294.7 210 69.5
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.3e-77 293.5 211 67.8
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.7e-77 293.1 212 70.8
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.9e-77 292.4 210 70.5
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.8e-77 292.0 211 69.2
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 4.9e-77 291.6 209 70.3
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 6.4e-77 291.2 210 69.0
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 6.4e-77 291.2 211 66.8
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 8.4e-77 290.8 209 68.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 1.4e-76 290.0 227 63.9
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.4e-76 290.0 211 66.8
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.4e-76 290.0 210 68.6
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 3.2e-76 288.9 210 67.6
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 4.2e-76 288.5 211 68.2
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 4.2e-76 288.5 209 67.9
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 5.4e-76 288.1 214 67.8
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 5.4e-76 288.1 209 68.9
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.3e-74 283.5 210 66.7
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.7e-74 283.1 210 66.2
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 3.0e-74 282.3 209 67.0
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 3.0e-74 282.3 210 66.7
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 3.9e-74 282.0 209 67.9
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 5.1e-74 281.6 211 66.4
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.5e-73 280.0 209 66.5
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 3.3e-73 278.9 210 65.7
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 3.3e-73 278.9 210 64.8
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 4.3e-73 278.5 210 65.7
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 7.3e-73 277.7 212 67.0
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 2.8e-72 275.8 210 64.3
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.1e-71 273.9 209 67.9
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.4e-71 273.5 209 65.1
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.4e-71 273.5 210 66.2
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 2.4e-71 272.7 205 65.4
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 5.3e-71 271.6 210 64.8
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 6.9e-71 271.2 210 64.3
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 9.0e-71 270.8 210 64.3
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.2e-70 270.4 205 64.9
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.5e-70 270.0 210 63.8
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 2.6e-70 269.2 196 67.9
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.6e-70 269.2 210 64.8
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.6e-70 269.2 210 64.8
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 2.6e-70 269.2 210 64.8
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 5.8e-70 268.1 210 63.3
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 7.6e-70 267.7 195 67.2
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 9.9e-70 267.3 212 64.6
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.7e-69 266.5 210 63.3
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 3.8e-69 265.4 205 63.4
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.1e-68 263.8 209 64.6
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 1.4e-68 263.5 192 69.8
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.9e-68 263.1 205 63.4
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 3.2e-68 262.3 181 71.3
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.7e-67 259.2 144 88.9
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 3.5e-67 258.8 214 62.1
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.7e-66 256.5 202 62.9
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 3.9e-66 255.4 191 67.0
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.7e-66 254.2 234 57.7
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 4.8e-64 248.4 205 59.5
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 3.1e-63 245.7 199 63.8
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 4.5e-62 241.9 172 67.4
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 7.6e-62 241.1 205 61.0
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.8e-61 238.8 210 59.5
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.9e-61 238.4 187 63.1
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.0e-58 229.2 211 55.0
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.5e-57 226.9 155 72.3
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 3.9e-50 202.2 166 54.8
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 4.8e-48 195.3 209 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 6.7e-42 174.9 204 47.1
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 2.0e-38 163.3 141 61.7
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 3.8e-37 159.1 113 69.0
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.6e-35 153.7 182 41.2
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.1e-28 131.0 167 40.7
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 6.1e-27 125.2 79 73.4
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 2.2e-24 116.7 172 40.1
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 2.6e-22 109.8 63 73.0
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 2.6e-22 109.8 88 68.2
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 7.7e-22 108.2 107 46.7
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.0e-17 93.6 116 44.8
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 4.8e-16 89.0 196 32.7
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 7.0e-15 85.1 83 55.4
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 2.0e-14 83.6 78 55.1
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 2.0e-14 83.6 50 70.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 5.5e-12 75.5 71 53.5
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 5.5e-12 75.5 49 75.5
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 1.0e-10 71.2 151 33.1
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 1.2e-09 67.8 61 52.5
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 4.8e-08 62.4 55 54.5


User provided reference genes

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