Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24027_v3 Cicer arietinum L. HOM05D000504 ORTHO05D000403 1.5e-33 145.6 73 100.0
Ca_24034_v3 Cicer arietinum L. HOM05D000504 ORTHO05D034269 1.5e-33 145.6 73 100.0
Psat4g144000 Pisum sativum HOM05D000504 ORTHO05D034269 2.3e-26 121.7 73 83.6
Medtr8g041400 Medicago truncatula HOM05D000504 ORTHO05D000403 4.0e-26 120.9 73 82.2
TPR.G16365 Trifolium pratense HOM05D000504 ORTHO05D000403 1.2e-25 119.4 73 84.9
Glyma.13G189600 Glycine max HOM05D000504 ORTHO05D000403 4.4e-25 117.5 74 82.4
LjContig00430g0007141 Lotus japonicus HOM05D000504 ORTHO05D000403 2.8e-24 114.8 73 80.8
VMungo1127G0855 Vigna mungo HOM05D000504 ORTHO05D000403 9.1e-23 109.8 73 76.7
Phvul.011G196700 Phaseolus vulgaris HOM05D000504 ORTHO05D000403 3.5e-22 107.8 73 75.3
Lalb_Chr19g0132881 Lupinus albus HOM05D000504 ORTHO05D000403 1.3e-21 105.9 73 75.3
Cfa010964 Carpinus fangiana HOM05D000504 ORTHO05D000403 5.5e-20 100.5 72 69.4
Hma1.2p1_0233F.1_g098325 Hydrangea macrophylla HOM05D000504 ORTHO05D000403 4.7e-19 97.4 73 68.5
CiPaw.13G016800 Carya illinoinensis HOM05D000504 ORTHO05D000403 6.1e-19 97.1 72 70.8
Prupe.2G045700 Prunus persica HOM05D000504 ORTHO05D000403 1.8e-18 95.5 70 71.4
FAN03G2282 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.0e-18 94.4 70 70.0
FAN10G1368 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.0e-18 94.4 70 70.0
Haze_02972 Corylus avellana HOM05D000504 ORTHO05D000403 5.2e-18 94.0 69 68.1
FvH4_7g04100 Fragaria vesca HOM05D000504 ORTHO05D000403 5.2e-18 94.0 70 68.6
FAN06G3792 Fragaria x ananassa HOM05D000504 ORTHO05D000403 5.2e-18 94.0 70 68.6
RcHm_v2.0_Chr1g0327971 Rosa chinensis HOM05D000504 ORTHO05D000403 5.2e-18 94.0 70 70.0
Thecc.10G139000 Theobroma cacao HOM05D000504 ORTHO05D000403 5.2e-18 94.0 73 69.9
CiPaw.14G010500 Carya illinoinensis HOM05D000504 ORTHO05D000403 6.8e-18 93.6 72 68.1
arahy.Tifrunner.gnm1.ann1.F38IW4 Arachis hypogaea HOM05D000504 ORTHO05D000403 8.9e-18 93.2 65 72.3
arahy.Tifrunner.gnm1.ann1.GII8DZ Arachis hypogaea HOM05D000504 ORTHO05D000403 1.2e-17 92.8 65 72.3
MD07G1043200 Malus domestica HOM05D000504 ORTHO05D000403 1.5e-17 92.4 70 67.1
Cpa.g.sc1046.3 Carica papaya HOM05D000504 ORTHO05D000403 3.4e-17 91.3 74 63.5
Migut.B01177 Erythranthe guttata HOM05D000504 ORTHO05D000403 9.8e-17 89.7 66 63.6
QL04p021729 Quercus lobata HOM05D000504 ORTHO05D000403 1.3e-16 89.4 73 69.9
Actinidia06210 Actinidia chinensis HOM05D000504 ORTHO05D000403 2.2e-16 88.6 71 63.4
FAN01G1748 Fragaria x ananassa HOM05D000504 ORTHO05D000403 2.8e-16 88.2 70 67.1
Dinv31996 Davidia involucrata HOM05D000504 ORTHO05D000403 3.7e-16 87.8 73 60.3
Ciclev10000741m.g Citrus clementina HOM05D000504 ORTHO05D000403 6.3e-16 87.0 70 64.3
Gohir.D10G198000 Gossypium hirsutum HOM05D000504 ORTHO05D000403 8.3e-16 86.7 73 63.0
Gorai.011G221700 Gossypium raimondii HOM05D000504 ORTHO05D000403 8.3e-16 86.7 73 63.0
Duzib114G0104 Durio zibethinus HOM05D000504 ORTHO05D000403 1.1e-15 86.3 73 64.4
Gohir.A10G190200 Gossypium hirsutum HOM05D000504 ORTHO05D000403 1.1e-15 86.3 73 61.6
Potri.003G192400 Populus trichocarpa HOM05D000504 ORTHO05D000403 3.2e-15 84.7 71 62.0
GSVIVG01036585001 Vitis vinifera HOM05D000504 ORTHO05D000403 9.2e-15 83.2 64 64.1
Atru.chr12.1204 Acer truncatum HOM05D000504 ORTHO05D000403 1.2e-14 82.8 72 65.3
Sabra03G0143300 Salix brachista HOM05D000504 ORTHO05D000403 1.6e-14 82.4 71 62.0
MELO3C011800.2 Cucumis melo HOM05D000504 ORTHO05D000403 2.0e-14 82.0 73 64.4
CsaV3_5G029560 Cucumis sativus L. HOM05D000504 ORTHO05D000403 2.0e-14 82.0 73 64.4
ClCG11G013080 Citrullus lanatus HOM05D000504 ORTHO05D000403 4.6e-14 80.9 73 65.8
vmacro13794 Vaccinium macrocarpon HOM05D000504 ORTHO05D000403 7.8e-14 80.1 80 62.5
CSS0046471 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 1.0e-13 79.7 73 57.5
AUR62032574 Chenopodium quinoa HOM05D000504 ORTHO05D000403 1.0e-13 79.7 73 61.6
AUR62031692 Chenopodium quinoa HOM05D000504 ORTHO05D000403 1.3e-13 79.3 71 62.0
PGR044G2640 Punica granatum HOM05D000504 ORTHO05D000403 2.9e-13 78.2 73 57.5
Dinv02685 Davidia involucrata HOM05D000504 ORTHO05D000403 5.0e-13 77.4 73 54.8
Sed0015942 Sechium edule HOM05D000504 ORTHO05D000403 5.0e-13 77.4 72 62.5
Nn7g36977 Nelumbo nucifera HOM05D000504 ORTHO05D000403 1.1e-12 76.3 78 52.6
SGA_v2.0_scaffold375G50250 Striga asiatica HOM05D000504 ORTHO05D000403 1.5e-12 75.9 66 62.1
Peaxi162Scf00220g00233 Petunia axillaris HOM05D000504 ORTHO05D000403 1.9e-12 75.5 71 57.7
MSTRG.20494 Avicennia marina HOM05D000504 ORTHO05D000403 2.5e-12 75.1 66 57.6
CSS0016469 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 2.5e-12 75.1 74 56.8
EL10Ac2g02723 Beta vulgaris HOM05D000504 ORTHO05D000403 3.3e-12 74.7 68 66.2
TWI38G1530 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 3.3e-12 74.7 66 63.6
Ah.12g064810 Amaranthus hybridus HOM05D000504 ORTHO05D000403 7.3e-12 73.6 73 53.4
Eucgr.J00083 Eucalyptus grandis HOM05D000504 ORTHO05D000403 7.3e-12 73.6 70 55.7
Nitab4.5_0002838g0020 Nicotiana tabacum HOM05D000504 ORTHO05D000403 7.3e-12 73.6 71 59.2
Hund15763 Selenicereus undatus HOM05D000504 ORTHO05D000403 9.5e-12 73.2 66 60.6
Manes.04G155600 Manihot esculenta HOM05D000504 ORTHO05D000403 2.1e-11 72.0 71 56.3
SalBow5G2164 Salvia bowleyana HOM05D000504 ORTHO05D000403 2.1e-11 72.0 66 54.5
Hund13410 Selenicereus undatus HOM05D000504 ORTHO05D000403 2.8e-11 71.6 70 52.9
MBI19_g42234_MAGBIO Magnolia biondii HOM05D000504 ORTHO05D000403 3.6e-11 71.2 76 51.3
Nitab4.5_0004168g0070 Nicotiana tabacum HOM05D000504 ORTHO05D000403 4.7e-11 70.9 71 56.3
EL10Ac2g02725 Beta vulgaris HOM05D000009 ORTHO05D000008 6.1e-11 70.5 65 64.6
Sc11g0006220 Simmondsia chinensis HOM05D000504 ORTHO05D000403 1.0e-10 69.7 70 54.3
CAN.G134.30 Capsicum annuum HOM05D000504 ORTHO05D000403 2.3e-10 68.6 71 56.3
PGSC0003DMG400003293 Solanum tuberosum HOM05D000504 ORTHO05D000403 4.0e-10 67.8 66 59.1
SHI36296 Sapria himalayana HOM05D000504 ORTHO05D000403 2.0e-09 65.5 64 56.2
CDE07G1694 Ceratophyllum demersum HOM05D000504 ORTHO05D034269 4.4e-09 64.3 78 48.7
Thhalv10016463m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 5.8e-09 63.9 65 53.8
Rhsim07G0072800 Rhododendron simsii HOM05D000504 ORTHO05D000403 7.5e-09 63.5 80 52.5
Sopen01g040400 Solanum pennellii HOM05D000504 ORTHO05D000403 7.5e-09 63.5 66 57.6
Solyc01g096680.4 Solanum lycopersicum HOM05D000504 ORTHO05D000403 9.8e-09 63.2 66 56.1
EL10Ac2g02724 Beta vulgaris HOM05D000009 ORTHO05D000008 1.7e-08 62.4 68 58.8
A04p29540 Brassica napus HOM05D000504 ORTHO05D000403 8.3e-08 60.1 66 54.5
C04p66840 Brassica napus HOM05D000504 ORTHO05D000403 8.3e-08 60.1 66 54.5
BolC4t28185H Brassica oleracea HOM05D000504 ORTHO05D000403 8.3e-08 60.1 66 54.5
BraA04t18419Z Brassica rapa HOM05D000504 ORTHO05D000403 8.3e-08 60.1 66 54.5
Sp4g21080 Schrenkiella parvula HOM05D000504 ORTHO05D000403 1.4e-07 59.3 65 52.3
Aa31LG5G20990 Aethionema arabicum HOM05D000504 ORTHO05D000403 2.0e-06 55.5 68 45.6
Carub.0004s2072 Capsella rubella HOM05D000504 ORTHO05D000403 2.0e-06 55.5 66 48.5
AT2G38720 Arabidopsis thaliana HOM05D000504 ORTHO05D000403 2.7e-06 55.1 65 49.2
Hma1.2p1_1716F.1_g299150 Hydrangea macrophylla HOM05D001416 ORTHO05D020379 6.0e-06 53.9 34 73.5


User provided reference genes

Program Settings