Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 5.7e-141 504.2 248 100.0
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 6.8e-102 374.4 188 95.7
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 6.8e-102 374.4 188 95.7
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 6.8e-102 374.4 188 95.7
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.2e-101 373.6 188 95.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.5e-101 373.2 188 95.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 4.4e-101 371.7 188 94.7
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 5.7e-101 371.3 188 94.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.7e-100 369.8 190 93.2
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.7e-100 369.8 190 93.2
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.7e-100 369.8 190 93.2
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.7e-100 369.8 188 95.2
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 4.8e-100 368.2 190 92.6
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 8.3e-100 367.5 188 93.6
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 8.3e-100 367.5 188 93.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 8.3e-100 367.5 188 93.6
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 8.3e-100 367.5 188 93.6
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 8.3e-100 367.5 188 93.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.4e-99 366.7 188 93.1
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.4e-99 366.7 188 92.6
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.4e-99 366.7 188 92.6
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.8e-99 366.3 188 93.1
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.8e-99 366.3 188 92.6
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.1e-99 365.5 188 92.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.1e-99 365.5 188 93.1
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 4.1e-99 365.2 188 92.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.4e-99 364.8 188 92.6
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 5.4e-99 364.8 188 92.0
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 5.4e-99 364.8 188 92.6
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 9.1e-99 364.0 188 91.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 9.1e-99 364.0 188 91.5
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.2e-98 363.6 188 92.0
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-98 363.2 188 91.0
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.6e-98 363.2 188 92.6
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.6e-98 363.2 188 92.6
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.0e-98 362.8 188 91.5
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.7e-98 362.5 188 91.5
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 3.5e-98 362.1 188 91.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 4.5e-98 361.7 188 91.5
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.9e-98 361.3 188 91.5
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 7.7e-98 360.9 188 91.5
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 7.7e-98 360.9 188 91.5
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 7.7e-98 360.9 188 91.5
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 7.7e-98 360.9 188 92.0
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.0e-97 360.5 188 91.0
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.3e-97 360.1 188 89.9
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.7e-97 359.8 221 80.5
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.3e-97 359.4 187 92.0
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.9e-97 359.0 188 91.5
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 3.8e-97 358.6 188 92.0
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.8e-97 358.6 188 90.4
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 6.6e-97 357.8 196 89.3
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 6.6e-97 357.8 188 91.0
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 6.6e-97 357.8 188 91.0
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 6.6e-97 357.8 188 91.0
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 8.6e-97 357.5 188 90.4
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.1e-96 357.1 192 89.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.1e-96 357.1 188 90.4
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.5e-96 356.7 188 92.0
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.9e-96 356.3 188 89.9
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.9e-96 356.3 188 88.8
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.5e-96 355.9 188 91.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 5.5e-96 354.8 188 91.0
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 5.5e-96 354.8 190 88.9
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 7.2e-96 354.4 188 89.4
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 9.5e-96 354.0 188 89.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 9.5e-96 354.0 188 89.4
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.1e-95 352.8 188 87.8
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.1e-95 352.8 188 88.3
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 2.1e-95 352.8 188 90.4
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.1e-95 352.8 203 85.2
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 3.6e-95 352.1 188 87.8
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 3.6e-95 352.1 215 80.5
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 6.1e-95 351.3 233 76.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 8.0e-95 350.9 188 87.2
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.0e-94 350.5 200 86.5
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.4e-94 350.1 195 87.2
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.3e-94 349.4 188 87.2
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.0e-94 349.0 188 87.2
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 5.2e-94 348.2 189 88.4
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-93 346.7 189 85.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.5e-93 346.7 189 85.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 3.4e-93 345.5 183 90.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.4e-93 345.5 189 85.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.4e-93 345.1 189 85.2
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 5.7e-93 344.7 188 85.6
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 5.7e-93 344.7 189 84.7
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 5.7e-93 344.7 188 86.7
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.3e-92 343.6 229 76.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.7e-92 343.2 188 84.6
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.2e-92 342.8 188 85.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.7e-92 342.0 189 85.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 6.3e-92 341.3 188 83.5
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 5.4e-91 338.2 193 84.5
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 4.5e-90 335.1 188 82.4
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.1e-88 330.5 225 76.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.1e-88 330.5 225 76.0
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.5e-88 329.3 188 79.8
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 7.3e-88 327.8 170 91.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.2e-87 327.0 188 78.7
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.8e-87 325.9 188 79.3
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.6e-87 325.5 188 78.7
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.8e-86 323.2 188 81.4
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.8e-86 323.2 171 91.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 6.8e-86 321.2 170 88.8
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.7e-84 316.6 188 76.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.9e-84 315.1 190 74.7
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.2e-83 312.4 189 75.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.2e-82 310.5 161 90.7
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 4.3e-80 302.0 163 86.5
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 4.7e-79 298.5 163 88.3
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.1e-78 297.4 178 82.0
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 2.3e-73 279.6 170 80.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 5.6e-72 275.0 210 67.1
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 6.0e-66 255.0 188 66.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.5e-64 249.6 140 86.4
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.2e-62 241.9 189 63.0
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.6e-58 230.3 183 60.1
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.5e-56 223.0 208 51.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.8e-55 219.5 149 71.8
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 4.0e-54 215.7 129 83.7
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.3e-54 215.3 111 90.1
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-52 210.7 109 93.6
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.2e-50 204.1 158 63.9
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 4.6e-50 202.2 107 85.0
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.8e-50 201.4 109 89.0
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.3e-49 200.7 111 84.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-48 197.6 109 87.2
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.8e-38 163.7 78 94.9
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.1e-38 162.9 78 93.6
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 9.9e-37 157.9 84 91.7
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-36 157.5 78 89.7
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.3e-36 157.5 78 91.0
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.5e-35 152.1 80 83.8
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.8e-33 147.1 81 87.7
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 3.0e-33 146.4 71 93.0
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.0e-33 146.4 155 47.1
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.1e-30 137.9 68 91.2
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.3e-30 135.6 68 88.2
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 5.3e-30 135.6 84 84.5
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 9.3e-27 124.8 69 82.6
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 4.6e-26 122.5 69 81.2
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 4.6e-26 122.5 69 81.2
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 4.6e-18 95.9 51 80.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 3.9e-17 92.8 47 85.1
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 2.2e-12 77.0 38 89.5
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 5.0e-12 75.9 37 91.9
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 5.0e-12 75.9 37 91.9
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 5.0e-12 75.9 37 91.9
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 5.0e-12 75.9 37 91.9


User provided reference genes

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