Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.1e-252 875.2 434 100.0
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 4.8e-228 794.3 434 90.1
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.4e-224 782.7 434 88.5
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 2.4e-219 765.4 434 85.9
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 8.5e-217 756.9 437 85.8
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 5.5e-216 754.2 434 85.3
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.7e-212 741.5 435 84.4
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.4e-211 738.8 434 84.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 5.2e-198 694.5 421 82.4
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 4.5e-194 681.4 437 76.2
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.5e-189 666.4 434 74.2
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 5.7e-189 664.5 430 73.0
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 3.7e-188 661.8 437 74.6
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.6e-186 656.4 437 73.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.7e-186 655.6 438 74.0
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 5.9e-186 654.4 434 77.0
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.7e-186 654.1 439 73.3
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.2e-183 646.7 434 73.3
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.0e-182 642.1 439 72.9
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.0e-182 642.1 439 72.9
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 4.0e-182 641.7 415 75.4
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 6.8e-182 641.0 446 69.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.6e-181 639.0 440 70.9
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.3e-180 636.7 439 72.0
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 4.9e-180 634.8 430 73.0
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.4e-179 633.3 426 71.1
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.8e-179 632.9 422 73.2
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.8e-179 632.9 423 72.8
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.0e-179 630.9 438 71.7
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 9.2e-179 630.6 422 72.7
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.2e-178 630.2 421 73.9
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.0e-178 629.4 439 70.2
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.7e-178 629.0 438 69.6
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 3.5e-178 628.6 446 67.9
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 4.5e-178 628.2 436 69.3
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 5.9e-178 627.9 432 69.0
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.8e-178 627.5 438 69.2
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 7.8e-178 627.5 427 70.0
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.3e-177 626.7 431 68.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-177 626.7 438 69.2
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.7e-177 626.3 417 70.5
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.9e-177 625.2 437 70.7
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 3.9e-177 625.2 435 69.4
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 5.0e-177 624.8 437 69.3
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.0e-177 624.8 423 72.1
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.6e-177 624.4 432 68.8
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-176 622.9 435 70.1
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 1.9e-176 622.9 438 68.7
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 2.5e-176 622.5 438 69.2
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 5.6e-176 621.3 476 66.4
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 7.3e-176 620.9 439 68.1
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.1e-175 619.4 425 70.8
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 2.1e-175 619.4 469 67.0
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 3.6e-175 618.6 423 71.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 4.7e-175 618.2 438 69.4
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.0e-174 617.1 436 68.8
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.4e-174 616.7 450 67.3
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.4e-174 616.7 436 68.3
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.0e-174 615.1 435 69.4
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 6.8e-174 614.4 432 69.0
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 8.9e-174 614.0 431 68.7
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.5e-173 613.2 422 68.7
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.6e-173 612.5 439 67.4
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.4e-173 612.1 436 68.1
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.2e-172 609.4 438 68.5
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.9e-172 609.0 439 67.7
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 4.9e-172 608.2 431 68.7
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 4.9e-172 608.2 440 67.0
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 6.4e-172 607.8 424 69.6
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 6.4e-172 607.8 433 69.1
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 8.3e-172 607.4 424 69.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.4e-171 606.7 433 68.8
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.2e-171 605.5 433 68.1
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 5.4e-171 604.7 431 68.9
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.6e-170 603.2 434 70.3
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.6e-170 603.2 412 73.5
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 5.0e-169 598.2 481 63.4
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.0e-166 588.6 501 60.3
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 4.4e-165 585.1 397 70.3
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.7e-164 583.2 429 66.4
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.4e-163 580.1 442 66.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.5e-160 570.1 418 69.6
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 8.3e-156 554.3 406 67.7
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-155 553.9 435 65.1
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.1e-155 552.0 383 67.9
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.2e-154 550.4 332 78.9
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.5e-154 548.9 330 79.4
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 7.8e-154 547.7 451 61.0
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 8.9e-150 534.3 410 64.9
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.6e-149 532.7 422 63.7
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 4.2e-147 525.4 339 74.9
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 4.6e-146 521.9 390 63.3
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 8.1e-143 511.1 334 76.6
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 4.4e-141 505.4 432 60.2
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 6.0e-138 495.0 409 62.6
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.5e-136 490.3 339 71.7
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.6e-135 486.9 369 64.2
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.3e-132 477.2 417 59.7
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.3e-132 477.2 435 56.6
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 6.4e-132 474.9 364 64.3
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 5.4e-131 471.9 345 67.5
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.6e-130 470.3 427 56.9
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.6e-130 470.3 428 54.4
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.3e-121 440.7 330 63.6
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.3e-121 439.9 413 54.7
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 4.3e-120 435.6 447 52.8
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 4.3e-120 435.6 404 55.2
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 1.3e-113 414.1 312 64.7
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.1e-110 402.5 434 52.1
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 9.0e-110 401.4 329 63.2
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 5.9e-109 398.7 363 59.5
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.7e-106 389.8 580 38.3
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.1e-102 375.9 377 55.2
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.7e-100 370.5 286 63.3
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 7.2e-99 365.2 270 67.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 3.3e-96 356.3 280 63.2
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 6.5e-92 342.0 270 60.7
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.6e-90 337.4 252 67.1
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.9e-83 313.9 202 71.8
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 5.5e-83 312.4 425 42.1
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 6.1e-82 308.9 234 65.8
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.8e-81 307.4 351 49.9
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 2.0e-80 303.9 421 43.9
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.4e-80 302.8 434 41.0
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.0e-76 291.6 401 43.9
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.5e-75 287.7 151 91.4
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.0e-68 265.0 218 59.2
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 3.3e-67 260.0 486 35.2
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 9.5e-67 258.5 233 54.9
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 4.0e-65 253.1 149 77.9
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.0e-65 253.1 360 41.7
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.5e-64 248.8 152 78.3
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.1e-59 235.0 149 73.2
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.3e-57 227.3 415 36.1
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.2e-57 226.1 182 62.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 8.9e-57 225.3 427 34.7
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.2e-54 216.9 143 69.9
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.7e-52 211.1 255 49.4
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 5.0e-52 209.5 139 72.7
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.6e-52 208.8 148 73.0
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 9.2e-46 188.7 117 76.1
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.9e-43 181.0 111 79.3
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.3e-30 135.6 90 71.1
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.3e-30 135.6 90 71.1
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-29 135.2 129 59.7
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 8.1e-26 122.5 422 25.8
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 3.1e-25 120.6 95 60.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.0e-21 106.3 61 80.3
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 3.4e-16 90.5 105 48.6
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 8.4e-15 85.9 327 27.8
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 6.0e-13 79.7 44 72.7
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 7.9e-13 79.3 49 71.4
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.7e-10 70.5 50 70.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-09 68.2 53 62.3
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 6.9e-09 66.2 52 59.6
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 9.0e-09 65.9 52 57.7
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.2e-08 65.5 52 57.7


User provided reference genes

Program Settings