Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23871_v3 Cicer arietinum L. HOM05D008543 ORTHO05D000630 3.9e-153 545.0 336 100.0
Psat1g077000 Pisum sativum HOM05D008543 ORTHO05D000630 6.0e-53 212.2 317 48.3
TPR.G11948 Trifolium pratense HOM05D008543 ORTHO05D000630 5.1e-52 209.1 364 48.4
Medtr6g081160 Medicago truncatula HOM05D022580 ORTHO05D000630 4.8e-42 176.0 334 39.8
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 5.5e-22 109.4 315 33.7
Glyma.13G073300 Glycine max HOM05D022580 ORTHO05D000630 9.4e-22 108.6 345 33.3
Glyma.20G047500 Glycine max HOM05D022580 ORTHO05D000630 2.6e-19 100.5 342 28.4
Lalb_Chr15g0080221 Lupinus albus HOM05D008543 ORTHO05D000630 3.3e-19 100.1 302 41.1
VMungo0540G2495 Vigna mungo HOM05D022580 ORTHO05D000630 2.4e-17 94.0 361 32.1
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 1.0e-15 88.6 220 33.2
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.2e-13 81.6 178 32.6
Phvul.006G020000 Phaseolus vulgaris HOM05D022580 ORTHO05D000630 1.6e-13 81.3 282 29.4
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 2.7e-13 80.5 203 31.0
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 6.1e-13 79.3 191 31.4
CiPaw.13G145600 Carya illinoinensis HOM05D019813 ORTHO05D000630 1.5e-11 74.7 181 30.9
CiPaw.12G142600 Carya illinoinensis HOM05D000174 ORTHO05D000630 3.3e-11 73.6 197 31.0
PGR119G0147 Punica granatum HOM05D000174 ORTHO05D000630 7.4e-11 72.4 194 28.4
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 1.3e-10 71.6 126 34.1
Haze_09916 Corylus avellana HOM05D000174 ORTHO05D000630 1.3e-10 71.6 152 31.6
FAN16G0761 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.3e-10 71.6 198 28.3
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 1.7e-10 71.2 188 30.9
CiPaw.11G210700 Carya illinoinensis HOM05D000174 ORTHO05D000630 2.8e-10 70.5 121 35.5
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 2.8e-10 70.5 217 25.8
Potri.001G224600 Populus trichocarpa HOM05D008543 ORTHO05D000630 2.8e-10 70.5 174 30.5
DCAR_017611 Daucus carota HOM05D000174 ORTHO05D000630 3.7e-10 70.1 229 26.2
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 6.3e-10 69.3 184 28.8
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 6.3e-10 69.3 122 32.0
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 8.2e-10 68.9 214 27.1
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 1.1e-09 68.6 127 33.1
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 1.1e-09 68.6 148 31.1
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.1e-09 68.6 127 35.4
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 1.4e-09 68.2 131 32.1
Sabra16G0133300 Salix brachista HOM05D008543 ORTHO05D000630 1.4e-09 68.2 175 30.3
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 1.8e-09 67.8 144 33.3
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 1.8e-09 67.8 217 25.8
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 1.8e-09 67.8 180 30.0
Cpa.g.sc12.67 Carica papaya HOM05D000174 ORTHO05D000630 2.4e-09 67.4 179 29.6
RcHm_v2.0_Chr5g0074621 Rosa chinensis HOM05D000174 ORTHO05D000630 2.4e-09 67.4 133 33.8
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 2.4e-09 67.4 134 31.3
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 3.1e-09 67.0 144 31.2
FvH4_3g41600 Fragaria vesca HOM05D000174 ORTHO05D000630 4.1e-09 66.6 127 34.6
FAN11G0349 Fragaria x ananassa HOM05D000174 ORTHO05D000630 4.1e-09 66.6 127 34.6
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 4.1e-09 66.6 189 25.9
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 5.3e-09 66.2 127 34.6
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 5.3e-09 66.2 219 30.6
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 7.0e-09 65.9 168 32.7
Manes.01G176050 Manihot esculenta HOM05D049795 ORTHO05D000630 7.0e-09 65.9 188 29.8
Cfa016961 Carpinus fangiana HOM05D000174 ORTHO05D000630 9.1e-09 65.5 120 32.5
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 1.2e-08 65.1 235 26.4
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 1.6e-08 64.7 210 26.2
Lalb_Chr17g0347691 Lupinus albus HOM05D008543 ORTHO05D000630 1.6e-08 64.7 213 26.8
Nitab4.5_0003570g0030 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.6e-08 64.7 151 31.8
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 2.0e-08 64.3 224 27.7
TWI75G0649 Tripterygium wilfordii HOM05D008543 ORTHO05D000630 2.0e-08 64.3 121 30.6
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 2.6e-08 63.9 158 39.2
MD11G1124800 Malus domestica HOM05D025829 ORTHO05D000630 3.5e-08 63.5 122 35.2
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 4.5e-08 63.2 168 28.6
A10p13430 Brassica napus HOM05D000174 ORTHO05D000630 7.7e-08 62.4 127 33.9
BraA10t43446Z Brassica rapa HOM05D000174 ORTHO05D000630 7.7e-08 62.4 127 33.9
CSS0016853 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 7.7e-08 62.4 122 31.1
CSS0041839 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 7.7e-08 62.4 122 31.1
Gorai.004G014300 Gossypium raimondii HOM05D008543 ORTHO05D000630 7.7e-08 62.4 288 25.3
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 1.0e-07 62.0 161 37.3
BcaC04g20137 Brassica carinata HOM05D000174 ORTHO05D000630 1.3e-07 61.6 127 33.9
BolC9t57599H Brassica oleracea HOM05D000174 ORTHO05D000630 1.3e-07 61.6 127 33.9
CSS0027724 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 1.3e-07 61.6 120 32.5
Gohir.A08G009700 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.3e-07 61.6 288 25.0
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.3e-07 61.6 123 34.1
Migut.M01582 Erythranthe guttata HOM05D008543 ORTHO05D000630 1.7e-07 61.2 123 52.8
CAN.G1085.7 Capsicum annuum HOM05D000174 ORTHO05D000630 2.2e-07 60.8 163 36.2
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 2.2e-07 60.8 122 32.8
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 2.2e-07 60.8 322 23.0
Thhalv10015446m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 2.9e-07 60.5 127 33.9
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 2.9e-07 60.5 276 31.9
Ciclev10007805m.g Citrus clementina HOM05D000174 ORTHO05D000630 3.8e-07 60.1 154 26.0
Cc01_g06930 Coffea canephora HOM05D000174 ORTHO05D000630 3.8e-07 60.1 131 32.1
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 3.8e-07 60.1 129 43.4
CARHR269600 Cardamine hirsuta HOM05D000174 ORTHO05D000630 5.0e-07 59.7 125 32.8
Ca_12245_v3 Cicer arietinum L. HOM05D027424 ORTHO05D017834 5.0e-07 59.7 161 28.6
Ca_12258_v3 Cicer arietinum L. HOM05D027424 ORTHO05D022364 5.0e-07 59.7 157 28.7
Prupe.6G093500 Prunus persica HOM05D025829 ORTHO05D000630 5.0e-07 59.7 147 29.3
Duzib150G0090 Durio zibethinus HOM05D008543 ORTHO05D000630 6.5e-07 59.3 137 27.0
Sp6g18050 Schrenkiella parvula HOM05D000174 ORTHO05D000630 6.5e-07 59.3 126 33.3
Sopen10g025660 Solanum pennellii HOM05D011325 ORTHO05D000630 6.5e-07 59.3 143 42.0
ATR1128G063 Amborella trichopoda HOM05D010587 ORTHO05D000630 8.5e-07 58.9 39 59.0
TAR627G0908 Trochodendron aralioides HOM05D000174 ORTHO05D000630 8.5e-07 58.9 188 31.4
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 1.1e-06 58.5 128 32.0
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 1.1e-06 58.5 126 34.1
Gohir.D08G019750 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.1e-06 58.5 288 25.3
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 1.1e-06 58.5 128 43.8
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.1e-06 58.5 124 33.1
C09p47440 Brassica napus HOM05D000174 ORTHO05D000630 1.5e-06 58.2 123 34.1
SGA_v2.0_scaffold79G25559 Striga asiatica HOM05D011325 ORTHO05D000630 1.5e-06 58.2 126 31.7
Atru.chr2.3896 Acer truncatum HOM05D000174 ORTHO05D000630 1.9e-06 57.8 214 30.8
A07p17920 Brassica napus HOM05D012084 ORTHO05D000630 1.9e-06 57.8 127 37.8
BraA07t29510Z Brassica rapa HOM05D012084 ORTHO05D000630 1.9e-06 57.8 127 37.8
SGA_v2.0_scaffold11G05961 Striga asiatica HOM05D010587 ORTHO05D000630 1.9e-06 57.8 128 28.1
ATR0730G014 Amborella trichopoda HOM05D010587 ORTHO05D000630 2.5e-06 57.4 45 51.1
ATR0874G001 Amborella trichopoda HOM05D010587 ORTHO05D000630 2.5e-06 57.4 40 57.5
ATR1101G089 Amborella trichopoda HOM05D010587 ORTHO05D000630 2.5e-06 57.4 40 57.5
Duzib168G2176 Durio zibethinus HOM05D008543 ORTHO05D000630 2.5e-06 57.4 170 27.6
Gohir.A07G119050 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.5e-06 57.4 314 24.5
COL.COLO4_33268 Corchorus olitorius HOM05D008543 ORTHO05D000630 3.2e-06 57.0 126 30.2
Gohir.D07G123350 Gossypium hirsutum HOM05D008543 ORTHO05D000630 3.2e-06 57.0 342 24.6
Gorai.001G133100 Gossypium raimondii HOM05D008543 ORTHO05D000630 3.2e-06 57.0 312 24.4
AT5G56200 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 4.2e-06 56.6 127 32.3
BolC4t23958H Brassica oleracea HOM05D012084 ORTHO05D000630 4.2e-06 56.6 140 28.6
Sp4g08400 Schrenkiella parvula HOM05D012084 ORTHO05D000630 4.2e-06 56.6 125 32.0
Aqoxy4G02266 Aquilegia oxysepala HOM05D000174 ORTHO05D000630 5.5e-06 56.2 315 32.7
Sopen10g026890 Solanum pennellii HOM05D011325 ORTHO05D000630 5.5e-06 56.2 128 43.0
MD03G1110900 Malus domestica HOM05D025829 ORTHO05D000630 7.2e-06 55.8 178 28.7
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 9.4e-06 55.5 123 32.5
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 9.4e-06 55.5 131 29.0
Glyma.16G102000 Glycine max HOM05D008543 ORTHO05D000630 9.4e-06 55.5 135 27.4
Nn1g07630 Nelumbo nucifera HOM05D000174 ORTHO05D000630 9.4e-06 55.5 171 26.9


User provided reference genes

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